Ss1.1-Pig2-107F16.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGGATGGTTGCCCCCTGAGAAGTTCGGTCGCCGAGCTGCCCCCCTGAGAAGGTGAGAAC GGTCGGTTTCATCATCCGCACAGTTTCTCACAGGAGAGGCTGGCACGCCGGAAGCCACGG GCCCCGTCATCGTGATCCCCCCGCGCAACAGCAGTGTGGTGGCCGGGTCCAGTGAGGCGA CCCTGGAGTGCATCGCCAGCGCCAGGCCTCTGGAGGAGCTGAGGGTGACCTGGAAGAGAA ACGGGGTGCCCGTCACCAGTGGGCTGCACAGCTTTGGAAGACGCCTCACCATCAGCACCC CGACCTCCTCGGACACCGGGCCGTATGTCTGCGAGGCGGCGCTGCCGGGGAGCCCTTTCG AGCCTGCCAGAGCCCAGGCCTTCCTCTCCATCATAGAGCCACCGTATTTTACCGCTGAAC CCGAGAGTCGGATTTTAGTGGAAGTGGAGGAAACCGTGGACCTCGCGTGTGGAGCCATGG GTGTCCCCCCTCCCGCCCTCCAGTGGTACAAGGATGCCGTCTCCGTCCACAAGCTCCGGA ACCCCCGCTACCAAGCGCTCCCGGCGGGAGGCCTGCGCATCCAGAAGCTGCGTCCGGAGG ACTCCGGAATCTTCCAGTGCTTTGCCAGTAACGAAGGCGGGGAGGCCCAGACCTCCACCT ACCTGGACGTCACCAACGTTGCACCAGCCTTTACCCAGCCTCCGGCGGACACCACGGTGA CGGACGGGATGACAGCCGTTCTGAGGTGCCAGGTGTCCGGGGCTCCCAGACCTGCCATCA CGTGGAGGAGAGGAAACCAGATTTTGGCCAGTGGCTCTGTGCGGATTCCTAGGTTCATGC TCCTCGAGTCTGGGGGCCTGCAGATAACCCCCGTCTTCATCCAGGACGCGGGCAACTATA CGTGCCATGCAGCCAACGCAGAGGGGTCCCTGCGCGCGTCTGCCACGCTCACCGTGTGGA ATCGGACGTCCATCGTGAGGCCCCCGGAGGACAGCGTGGTGATTAAGGGGACCACAGCGG CGCTGCACTGCGGAGCCACCCACGACCCCCGCGTGTCTCTCCGGTCAGCTCGGTCCCTTA CCATTGGGGCGCGTTCATATTCCGTGAGCTCAGGAGCGCAGCAGAGATGAGAAGGGAGGC CCCGCAGGAACTCGGATTTCAGCCGCAGATCCCTGATTGCGGCGGCGTGCGGTCCCGGGC GCCGCTATTAATCACACAAATCCCATTTTCCACCCCAGCCTTATGTATTATTTACAGGGA GCTGTGTTCCACTCCGTGGCTTCAATACAGCTTTTCATGATTCCTCTGCCAAGGTTAATA CACTATCTGTAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGGATGGTTGCCCCCTGAGAAGTTCGGTCGCCGAGCTGCCCCCCTGAGAAGGTGAGAAC GGTCGGTTTCATCATCCGCACAGTTTCTCACAGGAGAGGCTGGCACGCCGGAAGCCACGG GCCCCGTCATCGTGATCCCCCCGCGCAACAGCAGTGTGGTGGCCGGGTCCAGTGAGGCGA CCCTGGAGTGCATCGCCAGCGCCAGGCCTCTGGAGGAGCTGAGGGTGACCTGGAAGAGAA ACGGGGTGCCCGTCACCAGTGGGCTGCACAGCTTTGGAAGACGCCTCACCATCAGCACCC CGACCTCCTCGGACACCGGGCCGTATGTCTGCGAGGCGGCGCTGCCGGGGAGCCCTTTCG AGCCTGCCAGAGCCCAGGCCTTCCTCTCCATCATAGAGCCACCGTATTTTACCGCTGAAC CCGAGAGTCGGATTTTAGTGGAAGTGGAGGAAACCGTGGACCTCGCGTGTGGAGCCATGG GTGTCCCCCCTCCCGCCCTCCAGTGGTACAAGGATGCCGTCTCCGTCCACAAGCTCCGGA ACCCCCGCTACCAAGCGCTCCCGGCGGGAGGCCTGCGCATCCAGAAGCTGCGTCCGGAGG ACTCCGGAATCTTCCAGTGCTTTGCCAGTAACGAAGGCGGGGAGGCCCAGACCTCCACCT ACCTGGACGTCACCAACGTTGCACCAGCCTTTACCCAGCCTCCGGCGGACACCACGGTGA CGGACGGGATGACAGCCGTTCTGAGGTGCCAGGTGTCCGGGGCTCCCAGACCTGCCATCA CGTGGAGGAGAGGAAACCAGATTTTGGCCAGTGGCTCTGTGCGGATTCCTAGGTTCATGC TCCTCGAGTCTGGGGGCCTGCAGATAACCCCCGTCTTCATCCAGGACGCGGGCAACTATA CGTGCCATGCAGCCAACGCAGAGGGGTCCCTGCGCGCGTCTGCCACGCTCACCGTGTGGA ATCGGACGTCCATCGTGAGGCCCCCGGAGGACAGCGTGGTGATTAAGGGGACCACAGCGG CGCTGCACTGCGGAGCCACCCACGACCCCCGCGTGTCTCTCCGGTCAGCTCGGTCCCTTA CCATTGGGGCGCGTTCATATTCCGTGAGCTCAGGAGCGCAGCAGAGATGAGAAGGGAGGC CCCGCAGGAACTCGGATTTCAGCCGCAGATCCCTGATTGCGGCGGCGTGCGGTCCCGGGC GCCGCTATTAATCACACAAATCCCATTTTCCACCCCAGCCTTATGTATTATTTACAGGGA GCTGTGTTCCACTCCGTGGCTTCAATACAGCTTTTCATGATTCCTCTGCCAAGGTTAATA CACTATCTGTAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 265-384, - strand, RNAz p=0.855351 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 265-384, - strand, RNAz p=0.855351 |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 202-396, gnl|bosTau2|chr25 (37929824-37929630) | |
| 202-396, gnl|canFam2|chr6 (16386975-16386826) | |
| 202-396, gnl|danRer3|chr3 (36740250-36740397) | |
| 202-396, gnl|dasNov1|scaffold_16076 (1276-1138) | |
| 202-396, gnl|fr1|chrUn (293714601-293714752) | |
| 202-396, gnl|galGal2|chr14 (5891747-5891896) | |
| 202-396, gnl|hg17|chr7 (3764586-3764735) | |
| 202-396, gnl|Hg17|chr7 (3764599-3764793) | |
| 202-396, gnl|loxAfr1|scaffold_139527 (1512-1363) | |
| 202-396, gnl|mm7|chr5 (140915210-140915362) | |
| 202-396, gnl|Mm7|chr5 (140915226-140915420) | |
| 202-396, gnl|monDom2|scaffold_17 (2770002-2770151) | |
| 202-396, gnl|oryCun1|scaffold_193584 (19503-19651) | |
| 202-396, gnl|panTro1|chr6_random (29305650-29305799) | |
| 202-396, gnl|rheMac2|chr3 (41953676-41953825) | |
| 202-396, gnl|rn3|chr12 (13116215-13116063) | |
| 202-396, gnl|tetNig1|chr2 (388180-388314) | |
| 480-675, gnl|bosTau2|chr19 (52451895-52452090) | |
| 480-675, gnl|Hg17|chr17 (68943379-68943184) | |
| 480-675, gnl|Mm7|chr11 (113978966-113978771) | |
| 791-960, gnl|bosTau2|chr25 (37916350-37916181) | |
| 791-960, gnl|canFam2|chr6 (16370627-16370438) | |
| 791-960, gnl|danRer3|chr3 (36761885-36762066) | |
| 791-960, gnl|dasNov1|scaffold_15384 (54334-54145) | |
| 791-960, gnl|echTel1|scaffold_238143 (6173-5995) | |
| 791-960, gnl|fr1|chrUn (88321877-88321698) | |
| 791-960, gnl|galGal2|chr14 (5906955-5907137) | |
| 791-960, gnl|hg17|chr7 (3782123-3782312) | |
| 791-960, gnl|Hg17|chr7 (3782128-3782297) | |
| 791-960, gnl|loxAfr1|scaffold_81754 (7966-8155) | |
| 791-960, gnl|mm7|chr5 (140933783-140933972) | |
| 791-960, gnl|Mm7|chr5 (140933788-140933957) | |
| 791-960, gnl|monDom2|scaffold_17 (2798520-2798709) | |
| 791-960, gnl|oryCun1|scaffold_178891 (37614-37806) | |
| 791-960, gnl|panTro1|chr6 (4176712-4176902) | |
| 791-960, gnl|rheMac2|chr3 (41972312-41972501) | |
| 791-960, gnl|rn3|chr12 (13096798-13096609) | |
| 791-960, gnl|tetNig1|chr2 (390911-391091) | |
| 791-960, gnl|xenTro1|scaffold_299 (564089-563901) | |
| 961-1332, gnl|bosTau2|chr25 (37914315-37913952) | |
| 961-1332, gnl|Hg17|chr7 (3784339-3784716) | |
| 961-1332, gnl|Mm7|chr5 (140936907-140937301) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 202-396, gnl|bosTau2|chr25 (37929824-37929630) | |
| 202-396, gnl|canFam2|chr6 (16386975-16386826) | |
| 202-396, gnl|danRer3|chr3 (36740250-36740397) | |
| 202-396, gnl|dasNov1|scaffold_16076 (1276-1138) | |
| 202-396, gnl|fr1|chrUn (293714601-293714752) | |
| 202-396, gnl|galGal2|chr14 (5891747-5891896) | |
| 202-396, gnl|hg17|chr7 (3764586-3764735) | |
| 202-396, gnl|Hg17|chr7 (3764599-3764793) | |
| 202-396, gnl|loxAfr1|scaffold_139527 (1512-1363) | |
| 202-396, gnl|mm7|chr5 (140915210-140915362) | |
| 202-396, gnl|Mm7|chr5 (140915226-140915420) | |
| 202-396, gnl|monDom2|scaffold_17 (2770002-2770151) | |
| 202-396, gnl|oryCun1|scaffold_193584 (19503-19651) | |
| 202-396, gnl|panTro1|chr6_random (29305650-29305799) | |
| 202-396, gnl|rheMac2|chr3 (41953676-41953825) | |
| 202-396, gnl|rn3|chr12 (13116215-13116063) | |
| 202-396, gnl|tetNig1|chr2 (388180-388314) | |
| 480-675, gnl|bosTau2|chr19 (52451895-52452090) | |
| 480-675, gnl|Hg17|chr17 (68943379-68943184) | |
| 480-675, gnl|Mm7|chr11 (113978966-113978771) | |
| 791-960, gnl|bosTau2|chr25 (37916350-37916181) | |
| 791-960, gnl|canFam2|chr6 (16370627-16370438) | |
| 791-960, gnl|danRer3|chr3 (36761885-36762066) | |
| 791-960, gnl|dasNov1|scaffold_15384 (54334-54145) | |
| 791-960, gnl|echTel1|scaffold_238143 (6173-5995) | |
| 791-960, gnl|fr1|chrUn (88321877-88321698) | |
| 791-960, gnl|galGal2|chr14 (5906955-5907137) | |
| 791-960, gnl|hg17|chr7 (3782123-3782312) | |
| 791-960, gnl|Hg17|chr7 (3782128-3782297) | |
| 791-960, gnl|loxAfr1|scaffold_81754 (7966-8155) | |
| 791-960, gnl|mm7|chr5 (140933783-140933972) | |
| 791-960, gnl|Mm7|chr5 (140933788-140933957) | |
| 791-960, gnl|monDom2|scaffold_17 (2798520-2798709) | |
| 791-960, gnl|oryCun1|scaffold_178891 (37614-37806) | |
| 791-960, gnl|panTro1|chr6 (4176712-4176902) | |
| 791-960, gnl|rheMac2|chr3 (41972312-41972501) | |
| 791-960, gnl|rn3|chr12 (13096798-13096609) | |
| 791-960, gnl|tetNig1|chr2 (390911-391091) | |
| 791-960, gnl|xenTro1|scaffold_299 (564089-563901) | |
| 961-1332, gnl|bosTau2|chr25 (37914315-37913952) | |
| 961-1332, gnl|Hg17|chr7 (3784339-3784716) | |
| 961-1332, gnl|Mm7|chr5 (140936907-140937301) |