Non-Coding RNA Search

Ss1.1-Pig2-108G01.5

Sequence:


               
               TTTAGAAAAAATAATTTGGGATTTGGTGGCAGCCTCCCCCCAGGCTAGTACCTTCCAAAC
GTCTCCATCTGACTCTTGCCTCAAGCTCTGCAAGTTTCCAAGCACTTCATTTTGCAACCT
GGCCTTATCTGCCAGGTGCACCTGTTGAAACTGAGGCATCACCTCGGCAGCCACATACCT
GGATTAGACCACGGAGTTGCTCCTGACTGATTATTTCTTTGGTCCACTAGCAAAGCTGCT
TCCCCACTCAGGGTTATGGAAGCATAGTTTCTAAACTTCATTAGCACAGACTCCTCTGAA
GAGGTTCAGCTTGAATCTTGTGGGGTGGCAGAACCCCACGTGCCTCCCCATGCTGGGCCT
CATGTCCCCGGCCCCGGGCCTGCAGCCTGGACCTACCAGACATTCACGGCAGGAGTGATG
ATGATCAGTCTTCTTATTTCTTTGCTTTAGTTCTCTCACTACAACCAAATCTGTTTCATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTAGAAAAAATAATTTGGGATTTGGTGGCAGCCTCCCCCCAGGCTAGTACCTTCCAAAC
GTCTCCATCTGACTCTTGCCTCAAGCTCTGCAAGTTTCCAAGCACTTCATTTTGCAACCT
GGCCTTATCTGCCAGGTGCACCTGTTGAAACTGAGGCATCACCTCGGCAGCCACATACCT
GGATTAGACCACGGAGTTGCTCCTGACTGATTATTTCTTTGGTCCACTAGCAAAGCTGCT
TCCCCACTCAGGGTTATGGAAGCATAGTTTCTAAACTTCATTAGCACAGACTCCTCTGAA
GAGGTTCAGCTTGAATCTTGTGGGGTGGCAGAACCCCACGTGCCTCCCCATGCTGGGCCT
CATGTCCCCGGCCCCGGGCCTGCAGCCTGGACCTACCAGACATTCACGGCAGGAGTGATG
ATGATCAGTCTTCTTATTTCTTTGCTTTAGTTCTCTCACTACAACCAAATCTGTTTCATT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               48-142, - strand, RNAz p=0.820299

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               48-142, - strand, RNAz p=0.820299

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-448, gnl|bosTau2|chr18 (10376426-10375958)
               

               
               1-448, gnl|canFam2|chr5 (71963776-71963225)
               

               
               1-448, gnl|dasNov1|scaffold_924 (3936-4483)
               

               
               1-448, gnl|echTel1|scaffold_102535 (4603-4081)
               

               
               1-448, gnl|hg17|chr16 (81817048-81817591)
               

               
               1-448, gnl|Hg17|chr16 (81817193-81817681)
               

               
               1-448, gnl|loxAfr1|scaffold_4630 (30028-29493)
               

               
               1-448, gnl|mm7|chr8 (117483010-117483551)
               

               
               1-448, gnl|Mm7|chr8 (117483148-117483545)
               

               
               1-448, gnl|oryCun1|scaffold_207126 (34415-34961)
               

               
               1-448, gnl|panTro1|chr18 (76700795-76701338)
               

               
               1-448, gnl|rheMac2|chr20 (81359438-81359981)
               

               
               1-448, gnl|rn3|chr19 (49186432-49186994)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-448, gnl|bosTau2|chr18 (10376426-10375958)
               

               
               1-448, gnl|canFam2|chr5 (71963776-71963225)
               

               
               1-448, gnl|dasNov1|scaffold_924 (3936-4483)
               

               
               1-448, gnl|echTel1|scaffold_102535 (4603-4081)
               

               
               1-448, gnl|hg17|chr16 (81817048-81817591)
               

               
               1-448, gnl|Hg17|chr16 (81817193-81817681)
               

               
               1-448, gnl|loxAfr1|scaffold_4630 (30028-29493)
               

               
               1-448, gnl|mm7|chr8 (117483010-117483551)
               

               
               1-448, gnl|Mm7|chr8 (117483148-117483545)
               

               
               1-448, gnl|oryCun1|scaffold_207126 (34415-34961)
               

               
               1-448, gnl|panTro1|chr18 (76700795-76701338)
               

               
               1-448, gnl|rheMac2|chr20 (81359438-81359981)
               

               
               1-448, gnl|rn3|chr19 (49186432-49186994)

	1-448, gnl\|bosTau2\|chr18 (10376426-10375958)
	1-448, gnl\|canFam2\|chr5 (71963776-71963225)
	1-448, gnl\|dasNov1\|scaffold_924 (3936-4483)
	1-448, gnl\|echTel1\|scaffold_102535 (4603-4081)
	1-448, gnl\|hg17\|chr16 (81817048-81817591)
	1-448, gnl\|Hg17\|chr16 (81817193-81817681)
	1-448, gnl\|loxAfr1\|scaffold_4630 (30028-29493)
	1-448, gnl\|mm7\|chr8 (117483010-117483551)
	1-448, gnl\|Mm7\|chr8 (117483148-117483545)
	1-448, gnl\|oryCun1\|scaffold_207126 (34415-34961)
	1-448, gnl\|panTro1\|chr18 (76700795-76701338)
	1-448, gnl\|rheMac2\|chr20 (81359438-81359981)
	1-448, gnl\|rn3\|chr19 (49186432-49186994)