Ss1.1-Pig2-109F18.5
|
GGCAAGTGTAAAGAGAATATTTTTTTAAGAGGAATATAACTAATACATTCCACCCCCTTG
GAACCTGGCCATGCAAAGAGAAGGGCCTGGGGATGAGACCTATGATTCTCTTCCCTGATC
TCTTCATCTATAGGATTCAGGTCACCCCAGGGCCAGCCAGGGGGTTCTGAATCTATTTTG
TACCATGTTTCTTTGCCCTGGGCAAATTTCTAGCCTTCTTTCCCAAAGCAGTAGAGGGCT
TGGCCTCCCCTCCCACTTAGAGGTAAGCTCTCTCTGGAGGACTCTTTGTCTGAGACCTGG
GCAAGCTCTTTGCTGGTGGTCACCGCAAGCCACCAGCCTCTGAAGATTCCTCAGGTCAAC
ATCATCATTAAAAGCAAGTTTTGTTGATAATTCTACCATGTGGTAGAGTTTTGTGTAAGG
CCAGGTCACAAATGGGATTTTTTCTGGTGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGT
GTAAGAAAAAGAGAGACAGAGAATGTTCTGGGCGCCTCATTGCTTTTGTGTCTGTGTAAC
TACCTGTGAACTGTGTGGCTTGGTGTATAAAACTGTCTCTGCCTCTGTGTACACTTGCTC |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGCAAGTGTAAAGAGAATATTTTTTTAAGAGGAATATAACTAATACATTCCACCCCCTTG
GAACCTGGCCATGCAAAGAGAAGGGCCTGGGGATGAGACCTATGATTCTCTTCCCTGATC
TCTTCATCTATAGGATTCAGGTCACCCCAGGGCCAGCCAGGGGGTTCTGAATCTATTTTG
TACCATGTTTCTTTGCCCTGGGCAAATTTCTAGCCTTCTTTCCCAAAGCAGTAGAGGGCT
TGGCCTCCCCTCCCACTTAGAGGTAAGCTCTCTCTGGAGGACTCTTTGTCTGAGACCTGG
GCAAGCTCTTTGCTGGTGGTCACCGCAAGCCACCAGCCTCTGAAGATTCCTCAGGTCAAC
ATCATCATTAAAAGCAAGTTTTGTTGATAATTCTACCATGTGGTAGAGTTTTGTGTAAGG
CCAGGTCACAAATGGGATTTTTTCTGGTGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGT
GTAAGAAAAAGAGAGACAGAGAATGTTCTGGGCGCCTCATTGCTTTTGTGTCTGTGTAAC
TACCTGTGAACTGTGTGGCTTGGTGTATAAAACTGTCTCTGCCTCTGTGTACACTTGCTC |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
199-291, + strand, RNAmicro p=0.964296 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
199-291, + strand, RNAmicro p=0.964296 |
|
145-388, DB299158 BRACE3 Homo sapiens cDNA clone BRACE3013681 3', mRNA
(dbj|DB299158.1|), blast E-value=7e-21, identity=81.05% |
|
145-388, DB382129 THYRO1 Homo sapiens cDNA clone THYRO1000877 3', mRNA
(dbj|DB382129.1|), blast E-value=7e-21, identity=81.05% |
|
39-390, DB820834 full-length enriched swine cDNA library, adult uterus Sus
(dbj|DB820834.1|), blast E-value=0, identity=99.72% |
|
124-388, 27174 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb|AW479755.1|),
blast E-value=1e-37, identity=83.03% |
|
145-388, nad84a11.x1 NCI_CGAP_Pr28 Homo sapiens cDNA clone IMAGE
(gb|BF939135.1|), blast E-value=7e-21, identity=81.05% |
|
145-388, ij44a11.x1 Human insulinoma Homo sapiens cDNA clone IMAGE
(gb|BM510855.1|), blast E-value=7e-21, identity=81.05% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
145-388, DB299158 BRACE3 Homo sapiens cDNA clone BRACE3013681 3', mRNA
(dbj|DB299158.1|), blast E-value=7e-21, identity=81.05% |
|
145-388, DB382129 THYRO1 Homo sapiens cDNA clone THYRO1000877 3', mRNA
(dbj|DB382129.1|), blast E-value=7e-21, identity=81.05% |
|
39-390, DB820834 full-length enriched swine cDNA library, adult uterus Sus
(dbj|DB820834.1|), blast E-value=0, identity=99.72% |
|
124-388, 27174 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb|AW479755.1|),
blast E-value=1e-37, identity=83.03% |
|
145-388, nad84a11.x1 NCI_CGAP_Pr28 Homo sapiens cDNA clone IMAGE
(gb|BF939135.1|), blast E-value=7e-21, identity=81.05% |
|
145-388, ij44a11.x1 Human insulinoma Homo sapiens cDNA clone IMAGE
(gb|BM510855.1|), blast E-value=7e-21, identity=81.05% |
Human gene identifier and UTR site,
human gene reading direction
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
