Non-Coding RNA Search

Ss1.1-Pig2-10D12.5

Sequence:


               
               GCTCAGGCCAGTTCTGTGAATCCTGTGCTCCGGGATACAAGCGGGAGACACCACTGGGGG
GTCCCTATGCCAGCTGTGTTCCCTGCATCTGTAACCAGCATGGCACCTGTGACCCCAACA
CAGGGATCTGCCTGTGCGACCTTGCGGAGATCCGCGCTGACAAGCAGAATCTGGAGGCCA
TTCTGCACAGCCTGCCTGAGAGCTGTGCCAGCTGGCAGTGAGGGCGGCCTGGACCCCGCG
GCACACCCGGCCTAGGGTGTGCACACCCCCACAGATGCACCAGGCAGGCCCCCTCCCCAG
AGCCCACTGCCGTGTACCCCGTCCTGTGTGAATACTCACATGCCCTTCCGAGTCTGTGCC
CACATCCCCTCCATAGTGGCAGGAGTAGTATATTCGCAGCTCATCCAGGGGGGCTGNTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTCAGGCCAGTTCTGTGAATCCTGTGCTCCGGGATACAAGCGGGAGACACCACTGGGGG
GTCCCTATGCCAGCTGTGTTCCCTGCATCTGTAACCAGCATGGCACCTGTGACCCCAACA
CAGGGATCTGCCTGTGCGACCTTGCGGAGATCCGCGCTGACAAGCAGAATCTGGAGGCCA
TTCTGCACAGCCTGCCTGAGAGCTGTGCCAGCTGGCAGTGAGGGCGGCCTGGACCCCGCG
GCACACCCGGCCTAGGGTGTGCACACCCCCACAGATGCACCAGGCAGGCCCCCTCCCCAG
AGCCCACTGCCGTGTACCCCGTCCTGTGTGAATACTCACATGCCCTTCCGAGTCTGTGCC
CACATCCCCTCCATAGTGGCAGGAGTAGTATATTCGCAGCTCATCCAGGGGGGCTGNTGT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               6-134, - strand, RNAz p=0.814032
               

               
               176-273, - strand, RNAz p=0.640353

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               6-134, - strand, RNAz p=0.814032
               

               
               176-273, - strand, RNAz p=0.640353

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               6-134, gnl|bosTau2|chr11 (81676915-81677045)
               

               
               6-134, gnl|Hg17|chr9 (130961971-130962101)
               

               
               6-134, gnl|Mm7|chr2 (31923276-31923405)
               


               
               137-412, gnl|bosTau2|chr11 (81703416-81703691)
               

               
               137-412, gnl|Hg17|chr9 (130996644-130996939)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-134, gnl|bosTau2|chr11 (81676915-81677045)
               

               
               6-134, gnl|Hg17|chr9 (130961971-130962101)
               

               
               6-134, gnl|Mm7|chr2 (31923276-31923405)
               


               
               137-412, gnl|bosTau2|chr11 (81703416-81703691)
               

               
               137-412, gnl|Hg17|chr9 (130996644-130996939)

	6-134, - strand, RNAz p=0.814032
	176-273, - strand, RNAz p=0.640353

	6-134, gnl\|bosTau2\|chr11 (81676915-81677045)
	6-134, gnl\|Hg17\|chr9 (130961971-130962101)
	6-134, gnl\|Mm7\|chr2 (31923276-31923405)

	137-412, gnl\|bosTau2\|chr11 (81703416-81703691)
	137-412, gnl\|Hg17\|chr9 (130996644-130996939)