Non-Coding RNA Search

Ss1.1-Pig2-10E11.5

Sequence:


               
               GCCCACGCGTCCGGGAGGAGCAGTGGGAAGCTGCAGGCTGCTGCCCCTAGAGTCTGTGAT
GTTTCCCCATCTCTCCTCTTCCTCAAGAGAGAGGCACCCATGGGCCATGCCAGCCCCACT
CCTCTCAGCGCCTGGGCTTTCTCTCTGTCCCTTCAGAGGGCCCCCTTCTAGGGCTGCTCT
AGTGGAGGGGCTTTCAAACCCTGAGATGTTCAGGGTTGCACAAAGTCAATGGGGACAGGC
CTGGGCAACCAGAATCTGAGGCCACATCTCACTGCTCCCCCCAGTCTCCTTACCAAGCAG
GAGCCAGAGTGGATGAGAAGGTGCCCCATGGTTTTTTGTTTTTCTTTTTCTTACCCTGTC
CAGTTATCCCTGTTGTAGCAAATTTCTTAACACCTTTGGTGAAGAATTTCTTACCTGGCC
TTGGGCCTCTGATGCCCTTCGGTGTGTGGTGCGCGCAGTGTGCGTGTGTGTGTGTGTGTG
TGTGTGTGTGAGCGTGTGCGCGCGCGCGCGTGTGTGTTTATGTGTGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCACGCGTCCGGGAGGAGCAGTGGGAAGCTGCAGGCTGCTGCCCCTAGAGTCTGTGAT
GTTTCCCCATCTCTCCTCTTCCTCAAGAGAGAGGCACCCATGGGCCATGCCAGCCCCACT
CCTCTCAGCGCCTGGGCTTTCTCTCTGTCCCTTCAGAGGGCCCCCTTCTAGGGCTGCTCT
AGTGGAGGGGCTTTCAAACCCTGAGATGTTCAGGGTTGCACAAAGTCAATGGGGACAGGC
CTGGGCAACCAGAATCTGAGGCCACATCTCACTGCTCCCCCCAGTCTCCTTACCAAGCAG
GAGCCAGAGTGGATGAGAAGGTGCCCCATGGTTTTTTGTTTTTCTTTTTCTTACCCTGTC
CAGTTATCCCTGTTGTAGCAAATTTCTTAACACCTTTGGTGAAGAATTTCTTACCTGGCC
TTGGGCCTCTGATGCCCTTCGGTGTGTGGTGCGCGCAGTGTGCGTGTGTGTGTGTGTGTG
TGTGTGTGTGAGCGTGTGCGCGCGCGCGCGTGTGTGTTTATGTGTGTG

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               25-208, - strand, RNAz p=0.971856
               

               
               29-143, - strand, RNAz p=0.999735
               

               
               338-430, - strand, RNAz p=0.531767

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               25-208, - strand, RNAz p=0.971856
               

               
               29-143, - strand, RNAz p=0.999735
               

               
               338-430, - strand, RNAz p=0.531767

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               114-244, - strand, RNAmicro p=0.981836

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               114-244, - strand, RNAmicro p=0.981836

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_014767, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_014767, -

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               25-490, gnl|bosTau2|chr28 (21005408-21005862)
               

               
               25-490, gnl|canFam2|chr4 (25957555-25958409)
               

               
               25-490, gnl|hg17|chr10 (73490468-73491363)
               

               
               25-490, gnl|Hg17|chr10 (73491289-73490797)
               

               
               25-490, gnl|mm7|chr10 (59651729-59650763)
               

               
               25-490, gnl|Mm7|chr10 (59650843-59651288)
               

               
               25-490, gnl|monDom2|scaffold_14 (53198-54207)
               

               
               25-490, gnl|panTro1|chr8 (74712602-74713498)
               

               
               25-490, gnl|rheMac2|chr9 (64933499-64932607)
               

               
               25-490, gnl|rn3|chr20 (27437383-27436506)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               25-490, gnl|bosTau2|chr28 (21005408-21005862)
               

               
               25-490, gnl|canFam2|chr4 (25957555-25958409)
               

               
               25-490, gnl|hg17|chr10 (73490468-73491363)
               

               
               25-490, gnl|Hg17|chr10 (73491289-73490797)
               

               
               25-490, gnl|mm7|chr10 (59651729-59650763)
               

               
               25-490, gnl|Mm7|chr10 (59650843-59651288)
               

               
               25-490, gnl|monDom2|scaffold_14 (53198-54207)
               

               
               25-490, gnl|panTro1|chr8 (74712602-74713498)
               

               
               25-490, gnl|rheMac2|chr9 (64933499-64932607)
               

               
               25-490, gnl|rn3|chr20 (27437383-27436506)

	25-208, - strand, RNAz p=0.971856
	29-143, - strand, RNAz p=0.999735
	338-430, - strand, RNAz p=0.531767

	25-490, gnl\|bosTau2\|chr28 (21005408-21005862)
	25-490, gnl\|canFam2\|chr4 (25957555-25958409)
	25-490, gnl\|hg17\|chr10 (73490468-73491363)
	25-490, gnl\|Hg17\|chr10 (73491289-73490797)
	25-490, gnl\|mm7\|chr10 (59651729-59650763)
	25-490, gnl\|Mm7\|chr10 (59650843-59651288)
	25-490, gnl\|monDom2\|scaffold_14 (53198-54207)
	25-490, gnl\|panTro1\|chr8 (74712602-74713498)
	25-490, gnl\|rheMac2\|chr9 (64933499-64932607)
	25-490, gnl\|rn3\|chr20 (27437383-27436506)