Non-Coding RNA Search

Ss1.1-Pig2-111C03.5

Sequence:


               
               GCTGGCTCTGTTCAAGTGTGGGAGGGGAGAAGAGGCCCAGTTCCTCCTGGAAATGAAACT
TATCCCCCAAAAGGAAGACTGCCTTCCCCTGCTTCATTAAAGCATCATTTAGAGCTTCAA
GTGAGATCTGGTCAGAGGTCGCTTTGAAGAAGGCCAGCAGGGGCCATGACCACCCTCTCT
CCCGAAAACAGCCTTTCTGCCAGGCAGTCGGCCTCCTTCATCCTGGTGAAGAGAAAACCA
CCCATTGACAAGACAGAATGGGATGGCTTCTTTGACGAGAATGGTCACTTGGCCAAGTCA
CGAGACTTCATTTGCGTTAATATCCTGGAAAGGGGTCTGCACCCCTTCGTGAGGACGGAA
GCCTGGAAGTTCCTCACAGGCTACTACTCGTGGCAGAGTTCCCAGGATGAGCGGCTCACA
GTGGACAGCACGAGGAGGAAGAACTACGAGGCCTTATGCCAGATGTACGAGAAGATTCAG
CCCCTTCTGGAAAACCTGCACCGGAACTTCACAGAGACCCGGAACAATATCACATATGAC
ATCCAGAAACTCTATGACAAAGACCCCCTGGGCAATGTCCTTATTGATAAGAAGAGGCTG
GAGAAGATCCTGCTCCTGAGTTATGTCTGCAACACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGGCTCTGTTCAAGTGTGGGAGGGGAGAAGAGGCCCAGTTCCTCCTGGAAATGAAACT
TATCCCCCAAAAGGAAGACTGCCTTCCCCTGCTTCATTAAAGCATCATTTAGAGCTTCAA
GTGAGATCTGGTCAGAGGTCGCTTTGAAGAAGGCCAGCAGGGGCCATGACCACCCTCTCT
CCCGAAAACAGCCTTTCTGCCAGGCAGTCGGCCTCCTTCATCCTGGTGAAGAGAAAACCA
CCCATTGACAAGACAGAATGGGATGGCTTCTTTGACGAGAATGGTCACTTGGCCAAGTCA
CGAGACTTCATTTGCGTTAATATCCTGGAAAGGGGTCTGCACCCCTTCGTGAGGACGGAA
GCCTGGAAGTTCCTCACAGGCTACTACTCGTGGCAGAGTTCCCAGGATGAGCGGCTCACA
GTGGACAGCACGAGGAGGAAGAACTACGAGGCCTTATGCCAGATGTACGAGAAGATTCAG
CCCCTTCTGGAAAACCTGCACCGGAACTTCACAGAGACCCGGAACAATATCACATATGAC
ATCCAGAAACTCTATGACAAAGACCCCCTGGGCAATGTCCTTATTGATAAGAAGAGGCTG
GAGAAGATCCTGCTCCTGAGTTATGTCTGCAACACC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               80-199, - strand, RNAz p=0.719057

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-199, - strand, RNAz p=0.719057

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               1-227, gnl|bosTau2|chr10 (11946185-11945960)
               

               
               1-227, gnl|canFam2|chr30 (40132994-40133282)
               

               
               1-227, gnl|dasNov1|scaffold_128363 (6681-6958)
               

               
               1-227, gnl|echTel1|scaffold_311149 (9579-9307)
               

               
               1-227, gnl|hg17|chr15 (71952916-71953172)
               

               
               1-227, gnl|Hg17|chr15 (71952967-71953165)
               

               
               1-227, gnl|loxAfr1|scaffold_1005 (90215-90499)
               

               
               1-227, gnl|mm7|chr9 (58399171-58398932)
               

               
               1-227, gnl|Mm7|chr9 (58399126-58398932)
               

               
               1-227, gnl|panTro1|chr16_random (21084600-21084856)
               

               
               1-227, gnl|rheMac2|chr7 (52557965-52558241)
               

               
               1-227, gnl|rn3|chr8 (62183055-62182785)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-227, gnl|bosTau2|chr10 (11946185-11945960)
               

               
               1-227, gnl|canFam2|chr30 (40132994-40133282)
               

               
               1-227, gnl|dasNov1|scaffold_128363 (6681-6958)
               

               
               1-227, gnl|echTel1|scaffold_311149 (9579-9307)
               

               
               1-227, gnl|hg17|chr15 (71952916-71953172)
               

               
               1-227, gnl|Hg17|chr15 (71952967-71953165)
               

               
               1-227, gnl|loxAfr1|scaffold_1005 (90215-90499)
               

               
               1-227, gnl|mm7|chr9 (58399171-58398932)
               

               
               1-227, gnl|Mm7|chr9 (58399126-58398932)
               

               
               1-227, gnl|panTro1|chr16_random (21084600-21084856)
               

               
               1-227, gnl|rheMac2|chr7 (52557965-52558241)
               

               
               1-227, gnl|rn3|chr8 (62183055-62182785)

	1-227, gnl\|bosTau2\|chr10 (11946185-11945960)
	1-227, gnl\|canFam2\|chr30 (40132994-40133282)
	1-227, gnl\|dasNov1\|scaffold_128363 (6681-6958)
	1-227, gnl\|echTel1\|scaffold_311149 (9579-9307)
	1-227, gnl\|hg17\|chr15 (71952916-71953172)
	1-227, gnl\|Hg17\|chr15 (71952967-71953165)
	1-227, gnl\|loxAfr1\|scaffold_1005 (90215-90499)
	1-227, gnl\|mm7\|chr9 (58399171-58398932)
	1-227, gnl\|Mm7\|chr9 (58399126-58398932)
	1-227, gnl\|panTro1\|chr16_random (21084600-21084856)
	1-227, gnl\|rheMac2\|chr7 (52557965-52558241)
	1-227, gnl\|rn3\|chr8 (62183055-62182785)