Non-Coding RNA Search

Ss1.1-Pig2-111I22.5

Sequence:


               
               TCCTCGCGTGTTTCAGATCCTTGNCCACGAAAAGAACTTGATTTCTCTAAGCATCATCTC
CGCTCACCGCGTTCCCTCCCCCTCCCACTCCTCACTTCCTCGTCCACAAGCTGGGCCTCC
ATCCCACCACGTGGACATAGTTTAGAAGCCATCAGGGACGATTTCGTGGCCAAATTCGGT
GGCCTTTCCTCTCTCCTTCATCTCCACGTCCACACTCAGTGACCATGGCATGCCATCGCT
GACCTGACTTTCCCTCTTCTCCAAGATTTCCTCACTCCTAAACAGTCTTCATTCCTTTTC
CTTGTTTTACCTAAAGGCTGGTTTGGCAGGTGGTTCTCAAACTTTGGACCAGCTCTGGGG
CTCATGGCAGGGAAGGCAGCTCCGAGTAGAACCACAGGTCACTGGGCACTACTCGGTAGC
TCTGGAGTCCAGCCTGGCTGGCATCTGCAGCTTCAGCAAACCCCATGTAGGGGGTCCTAG
ACCACGTTTGAGAAGCTCTCACCCTTAGGGTCCCCACGCCTCCCTGACTCCAGCTGTCCC
CTTTGCAGTGACTCCTGGTCCCAGCTCCAGCCCTCCTCTTTAGGAATGCATTTCTGGCTC
TACCTAGAAGCCCCGGGACAGCCTCAGACTCACTCCCCAGACCCTCGGCTTGTCTAGGTT
CCTTGCTGCCCTGTCCCGCCCAGCCAGCCATAAGAGTCCCTTGTCCCTTTTTGGCCATTG
CCCCCTAGTCGTGCCCTCACGGCCTCCCTGTGGGCATCAGCTTCTGACCAGGCAGTCACC
CTCAGCTTTCCCCGCCTCCCCCGAGACTGCCCAGCTGCTAGTGTATCCAATAAAAACACA
GTTCTGGAGAGCCCTCTTGTTATTCAGTGATCAGTGGCTCACTTGACCAGAGCATCAAGT
TCAGACCTCCCTGAGCTTGGTATCTGTGGCTGTCCACCCCCCAGTGCTACTTGATGGCCC
GCTTTGTATCGCCCACCCTCTCACTACAGGCACCATCTCCTCCGTTAGCCCTGGACTTCT
GCCTCCGTGTGCATCTCTTCTCTGCTGGAAATGCCCTTTCTCCCAAGTGGCGTTTGGCGT
CCCTCCTCAAAGGCCCAGCCCTGAGTCCCCCTGTCCCCTTGCCCAAAGCTTCTGACCAGA
AGCAGCCTCGCGGTGTTCTGTGACCTCACAGCACTTGTGTCTTGCTTTCGGCGCTTGCCC
CTCTGGCTGGTGTCACTGCCGCTATTGTGTACTGTGTCTTACCTCCTTTTCTAGACTGTG
AGCTCCTCGTGGGCAGGGCTGTCTGTGTTCACTTTCTGTATTTCCCATGGCACCTAGCAC
AGTGCCTTGCACTTCATAGGTGCTTAATAAAGTCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCTCGCGTGTTTCAGATCCTTGNCCACGAAAAGAACTTGATTTCTCTAAGCATCATCTC
CGCTCACCGCGTTCCCTCCCCCTCCCACTCCTCACTTCCTCGTCCACAAGCTGGGCCTCC
ATCCCACCACGTGGACATAGTTTAGAAGCCATCAGGGACGATTTCGTGGCCAAATTCGGT
GGCCTTTCCTCTCTCCTTCATCTCCACGTCCACACTCAGTGACCATGGCATGCCATCGCT
GACCTGACTTTCCCTCTTCTCCAAGATTTCCTCACTCCTAAACAGTCTTCATTCCTTTTC
CTTGTTTTACCTAAAGGCTGGTTTGGCAGGTGGTTCTCAAACTTTGGACCAGCTCTGGGG
CTCATGGCAGGGAAGGCAGCTCCGAGTAGAACCACAGGTCACTGGGCACTACTCGGTAGC
TCTGGAGTCCAGCCTGGCTGGCATCTGCAGCTTCAGCAAACCCCATGTAGGGGGTCCTAG
ACCACGTTTGAGAAGCTCTCACCCTTAGGGTCCCCACGCCTCCCTGACTCCAGCTGTCCC
CTTTGCAGTGACTCCTGGTCCCAGCTCCAGCCCTCCTCTTTAGGAATGCATTTCTGGCTC
TACCTAGAAGCCCCGGGACAGCCTCAGACTCACTCCCCAGACCCTCGGCTTGTCTAGGTT
CCTTGCTGCCCTGTCCCGCCCAGCCAGCCATAAGAGTCCCTTGTCCCTTTTTGGCCATTG
CCCCCTAGTCGTGCCCTCACGGCCTCCCTGTGGGCATCAGCTTCTGACCAGGCAGTCACC
CTCAGCTTTCCCCGCCTCCCCCGAGACTGCCCAGCTGCTAGTGTATCCAATAAAAACACA
GTTCTGGAGAGCCCTCTTGTTATTCAGTGATCAGTGGCTCACTTGACCAGAGCATCAAGT
TCAGACCTCCCTGAGCTTGGTATCTGTGGCTGTCCACCCCCCAGTGCTACTTGATGGCCC
GCTTTGTATCGCCCACCCTCTCACTACAGGCACCATCTCCTCCGTTAGCCCTGGACTTCT
GCCTCCGTGTGCATCTCTTCTCTGCTGGAAATGCCCTTTCTCCCAAGTGGCGTTTGGCGT
CCCTCCTCAAAGGCCCAGCCCTGAGTCCCCCTGTCCCCTTGCCCAAAGCTTCTGACCAGA
AGCAGCCTCGCGGTGTTCTGTGACCTCACAGCACTTGTGTCTTGCTTTCGGCGCTTGCCC
CTCTGGCTGGTGTCACTGCCGCTATTGTGTACTGTGTCTTACCTCCTTTTCTAGACTGTG
AGCTCCTCGTGGGCAGGGCTGTCTGTGTTCACTTTCTGTATTTCCCATGGCACCTAGCAC
AGTGCCTTGCACTTCATAGGTGCTTAATAAAGTCTG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1240-1356, - strand, RNAz p=0.984871

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1240-1356, - strand, RNAz p=0.984871

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               234-1356, gnl|bosTau2|chr18 (17177258-17178439)
               

               
               234-1356, gnl|Hg17|chr16 (47131266-47130148)
               

               
               234-1356, gnl|Mm7|chr8 (85432577-85431563)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               234-1356, gnl|bosTau2|chr18 (17177258-17178439)
               

               
               234-1356, gnl|Hg17|chr16 (47131266-47130148)
               

               
               234-1356, gnl|Mm7|chr8 (85432577-85431563)

	234-1356, gnl\|bosTau2\|chr18 (17177258-17178439)
	234-1356, gnl\|Hg17\|chr16 (47131266-47130148)
	234-1356, gnl\|Mm7\|chr8 (85432577-85431563)