Ss1.1-Pig2-111P17.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATGGACTTGGATTTCTTCGACTCCTACAGCATTACCGCCTGCCGCATCGACTGTGAGACA CGCTACCTGGTGGAGAACTGTAACTGCCGCATGGTGCACATGCCAGGGGATGCCCCATAC TGCACTCCAGAGCAGTACAAGGAGTGTGCAGACCCTGCTCTGGACTTCCTGGTGGAGAAG GACCAGGAGTACTGTGTGTGTGAAATGCCCTGCAATTTGACCCGCTATGGCAAGGAGCTG TCCATGGTCAAGATCCCCAGCAAAGCATCAGCCAAGTACCTGGCCAAGAAGTTCAACAAG TCTGAGCAGTACATAGGGGAGAACATCCTGGTGCTGGACATTTTCTTTGAAGTCCTCAAC TATGAGACCATCGAGCAGAAGAAGGCCTATGAGATTGCAGGGCTCCTGGGTGACATTGGT GGCCAGATGGGGCTGTTCATCGGGGCCAGCATCCTCACGGTGCTGGAGCTCTTCGACTAC GCCTACGAGGTCATTAAACACAAACTGTGCCGCCGCGGCAAGTGCCAGAAGGAGGCCAAA CGGAGCAGCGCGGACAAGGGTGTGGCCCTCAGCCTGGATGACGTCAAAAGACACAACCCA TGTGAGAGCCTCCGGGGCCATCCTGCTGGGATGACGTACGCTGCCAACATCCTACCTCAC CATCCGGCCCGAGGCACTTTTGAGGACTTTACCTGCTGAGCCCCGCAGGCCACTGTACCA AAGGCCTAGATGGGGAGGGCTAGGAGCGCAAGGGGGCCCCCAGTTCCCCCCAACATCTGC CCTGGGGACTCACTCCCCCCTCCCAAGGCAGCCTCCACTCCTGGGCGGTCCTCTCCTCTT GTCTGTGGTGAGGAAGGAGTCTTGACCATAGAGTCCTCTCCCTGCCTCTATCCCATTCTT TTTCTTTTTTTCTTTTCTTTAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATGGACTTGGATTTCTTCGACTCCTACAGCATTACCGCCTGCCGCATCGACTGTGAGACA CGCTACCTGGTGGAGAACTGTAACTGCCGCATGGTGCACATGCCAGGGGATGCCCCATAC TGCACTCCAGAGCAGTACAAGGAGTGTGCAGACCCTGCTCTGGACTTCCTGGTGGAGAAG GACCAGGAGTACTGTGTGTGTGAAATGCCCTGCAATTTGACCCGCTATGGCAAGGAGCTG TCCATGGTCAAGATCCCCAGCAAAGCATCAGCCAAGTACCTGGCCAAGAAGTTCAACAAG TCTGAGCAGTACATAGGGGAGAACATCCTGGTGCTGGACATTTTCTTTGAAGTCCTCAAC TATGAGACCATCGAGCAGAAGAAGGCCTATGAGATTGCAGGGCTCCTGGGTGACATTGGT GGCCAGATGGGGCTGTTCATCGGGGCCAGCATCCTCACGGTGCTGGAGCTCTTCGACTAC GCCTACGAGGTCATTAAACACAAACTGTGCCGCCGCGGCAAGTGCCAGAAGGAGGCCAAA CGGAGCAGCGCGGACAAGGGTGTGGCCCTCAGCCTGGATGACGTCAAAAGACACAACCCA TGTGAGAGCCTCCGGGGCCATCCTGCTGGGATGACGTACGCTGCCAACATCCTACCTCAC CATCCGGCCCGAGGCACTTTTGAGGACTTTACCTGCTGAGCCCCGCAGGCCACTGTACCA AAGGCCTAGATGGGGAGGGCTAGGAGCGCAAGGGGGCCCCCAGTTCCCCCCAACATCTGC CCTGGGGACTCACTCCCCCCTCCCAAGGCAGCCTCCACTCCTGGGCGGTCCTCTCCTCTT GTCTGTGGTGAGGAAGGAGTCTTGACCATAGAGTCCTCTCCCTGCCTCTATCCCATTCTT TTTCTTTTTTTCTTTTCTTTAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 710-906, + strand, RNAz p=0.999673 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 710-906, + strand, RNAz p=0.999673 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_020039, + |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 1-107, gnl|bosTau2|chr19 (11987312-11987418) | |
| 1-107, gnl|canFam2|chr9 (43391667-43391489) | |
| 1-107, gnl|danRer3|chrNA (101458143-101457980) | |
| 1-107, gnl|dasNov1|scaffold_25516 (6497-6319) | |
| 1-107, gnl|echTel1|scaffold_282107 (47491-47669) | |
| 1-107, gnl|fr1|chrUn (115345954-115346122) | |
| 1-107, gnl|galGal2|chr27 (278113-278289) | |
| 1-107, gnl|hg17|chr17 (28379366-28379544) | |
| 1-107, gnl|Hg17|chr17 (28379478-28379372) | |
| 1-107, gnl|loxAfr1|scaffold_456 (25314-25163) | |
| 1-107, gnl|mm7|chr11 (80975542-80975731) | |
| 1-107, gnl|Mm7|chr11 (80975654-80975548) | |
| 1-107, gnl|monDom2|scaffold_44 (10716071-10715895) | |
| 1-107, gnl|oryCun1|scaffold_187053 (20905-21083) | |
| 1-107, gnl|panTro1|chr19 (31888307-31888485) | |
| 1-107, gnl|rheMac2|chr16 (28346554-28346732) | |
| 1-107, gnl|rn3|chr10 (69131746-69131924) | |
| 1-107, gnl|tetNig1|chr3 (13356411-13356574) | |
| 1-107, gnl|xenTro1|scaffold_312 (366244-366410) | |
| 163-318, gnl|bosTau2|chr5 (23049382-23049227) | |
| 163-318, gnl|Hg17|chr12 (48759951-48760106) | |
| 163-318, gnl|Mm7|chr15 (99682683-99682838) | |
| 169-314, gnl|bosTau2|chr19 (11991654-11991799) | |
| 169-314, gnl|canFam2|chr9 (43395274-43395113) | |
| 169-314, gnl|danRer3|chrNA (101460568-101460407) | |
| 169-314, gnl|dasNov1|scaffold_25516 (10107-9946) | |
| 169-314, gnl|echTel1|scaffold_282107 (43264-43426) | |
| 169-314, gnl|fr1|chrUn (115344722-115344883) | |
| 169-314, gnl|galGal2|chr27 (276748-276909) | |
| 169-314, gnl|hg17|chr17 (28374988-28375149) | |
| 169-314, gnl|Hg17|chr17 (28375140-28374995) | |
| 169-314, gnl|loxAfr1|scaffold_456 (26462-26301) | |
| 169-314, gnl|mm7|chr11 (80971304-80971465) | |
| 169-314, gnl|Mm7|chr11 (80971456-80971311) | |
| 169-314, gnl|monDom2|scaffold_44 (10720494-10720333) | |
| 169-314, gnl|oryCun1|scaffold_187053 (16690-16851) | |
| 169-314, gnl|panTro1|chr19 (31884001-31884162) | |
| 169-314, gnl|rheMac2|chr16 (28342043-28342204) | |
| 169-314, gnl|rn3|chr10 (69127543-69127704) | |
| 169-314, gnl|tetNig1|chr3 (13355309-13355462) | |
| 169-314, gnl|xenTro1|scaffold_312 (360107-360268) | |
| 592-916, gnl|bosTau2|chr5 (23048117-23047792) | |
| 592-916, gnl|Hg17|chr12 (48761592-48761890) | |
| 592-916, gnl|Mm7|chr15 (99684276-99684568) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-107, gnl|bosTau2|chr19 (11987312-11987418) | |
| 1-107, gnl|canFam2|chr9 (43391667-43391489) | |
| 1-107, gnl|danRer3|chrNA (101458143-101457980) | |
| 1-107, gnl|dasNov1|scaffold_25516 (6497-6319) | |
| 1-107, gnl|echTel1|scaffold_282107 (47491-47669) | |
| 1-107, gnl|fr1|chrUn (115345954-115346122) | |
| 1-107, gnl|galGal2|chr27 (278113-278289) | |
| 1-107, gnl|hg17|chr17 (28379366-28379544) | |
| 1-107, gnl|Hg17|chr17 (28379478-28379372) | |
| 1-107, gnl|loxAfr1|scaffold_456 (25314-25163) | |
| 1-107, gnl|mm7|chr11 (80975542-80975731) | |
| 1-107, gnl|Mm7|chr11 (80975654-80975548) | |
| 1-107, gnl|monDom2|scaffold_44 (10716071-10715895) | |
| 1-107, gnl|oryCun1|scaffold_187053 (20905-21083) | |
| 1-107, gnl|panTro1|chr19 (31888307-31888485) | |
| 1-107, gnl|rheMac2|chr16 (28346554-28346732) | |
| 1-107, gnl|rn3|chr10 (69131746-69131924) | |
| 1-107, gnl|tetNig1|chr3 (13356411-13356574) | |
| 1-107, gnl|xenTro1|scaffold_312 (366244-366410) | |
| 163-318, gnl|bosTau2|chr5 (23049382-23049227) | |
| 163-318, gnl|Hg17|chr12 (48759951-48760106) | |
| 163-318, gnl|Mm7|chr15 (99682683-99682838) | |
| 169-314, gnl|bosTau2|chr19 (11991654-11991799) | |
| 169-314, gnl|canFam2|chr9 (43395274-43395113) | |
| 169-314, gnl|danRer3|chrNA (101460568-101460407) | |
| 169-314, gnl|dasNov1|scaffold_25516 (10107-9946) | |
| 169-314, gnl|echTel1|scaffold_282107 (43264-43426) | |
| 169-314, gnl|fr1|chrUn (115344722-115344883) | |
| 169-314, gnl|galGal2|chr27 (276748-276909) | |
| 169-314, gnl|hg17|chr17 (28374988-28375149) | |
| 169-314, gnl|Hg17|chr17 (28375140-28374995) | |
| 169-314, gnl|loxAfr1|scaffold_456 (26462-26301) | |
| 169-314, gnl|mm7|chr11 (80971304-80971465) | |
| 169-314, gnl|Mm7|chr11 (80971456-80971311) | |
| 169-314, gnl|monDom2|scaffold_44 (10720494-10720333) | |
| 169-314, gnl|oryCun1|scaffold_187053 (16690-16851) | |
| 169-314, gnl|panTro1|chr19 (31884001-31884162) | |
| 169-314, gnl|rheMac2|chr16 (28342043-28342204) | |
| 169-314, gnl|rn3|chr10 (69127543-69127704) | |
| 169-314, gnl|tetNig1|chr3 (13355309-13355462) | |
| 169-314, gnl|xenTro1|scaffold_312 (360107-360268) | |
| 592-916, gnl|bosTau2|chr5 (23048117-23047792) | |
| 592-916, gnl|Hg17|chr12 (48761592-48761890) | |
| 592-916, gnl|Mm7|chr15 (99684276-99684568) |