Non-Coding RNA Search

Ss1.1-Pig2-113A05.5

Sequence:


               
               AATCTTATTACAGAAGACTGTTTTTAGTAGCTTATTGTGAAGCAAGCCAGCTATAAGGAA
TGTCTGTCTTGTTTTAAAGTCATATCTGTCTGCACAAATGCACCAATCAACAGATATATT
TTATATATTCCAGAAAAGTACAAAGTAATCGTGACCAGGGCTCAACCTTCATTTTGAATG
CATTTCCAGTGGTAGCACCTATTCCAGAAGTGGGGCAGGTAGAGTGGGATGGGTCAACTG
CAGCACCAGAAGGTGCTTGTTTATTCGAAATGTGGGTTTGCCCACCCAGCCCAGCAGATC
GTCGATAGTATTAGATTGGAAGTGTGGTGCTTTTCCGAGCAGATCAATAACTCTGTAGAC
GCTTTCCCCCACCCAACCCCCACCCCCCGACCCCAAAAGGCAAAAATCCTCAAGACTTCC
TAATGTTTTAATCCACATGCATGGTTAGGCAGCTGTAGGCTGGAATATTGACTTTCCCAT
GCCCCCAGTGGCCTTTAAGAGAGTCACAGATTGGGCCAGTCATCTGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATCTTATTACAGAAGACTGTTTTTAGTAGCTTATTGTGAAGCAAGCCAGCTATAAGGAA
TGTCTGTCTTGTTTTAAAGTCATATCTGTCTGCACAAATGCACCAATCAACAGATATATT
TTATATATTCCAGAAAAGTACAAAGTAATCGTGACCAGGGCTCAACCTTCATTTTGAATG
CATTTCCAGTGGTAGCACCTATTCCAGAAGTGGGGCAGGTAGAGTGGGATGGGTCAACTG
CAGCACCAGAAGGTGCTTGTTTATTCGAAATGTGGGTTTGCCCACCCAGCCCAGCAGATC
GTCGATAGTATTAGATTGGAAGTGTGGTGCTTTTCCGAGCAGATCAATAACTCTGTAGAC
GCTTTCCCCCACCCAACCCCCACCCCCCGACCCCAAAAGGCAAAAATCCTCAAGACTTCC
TAATGTTTTAATCCACATGCATGGTTAGGCAGCTGTAGGCTGGAATATTGACTTTCCCAT
GCCCCCAGTGGCCTTTAAGAGAGTCACAGATTGGGCCAGTCATCTGGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               21-115, - strand, RNAz p=0.550935

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               21-115, - strand, RNAz p=0.550935

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_032041, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_032041, -

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-528, gnl|bosTau2|chr14 (41241583-41242101)
               

               
               1-528, gnl|canFam2|chr13 (6385603-6386157)
               

               
               1-528, gnl|dasNov1|scaffold_588 (86915-87474)
               

               
               1-528, gnl|hg17|chr8 (102769196-102769747)
               

               
               1-528, gnl|Hg17|chr8 (102769894-102769389)
               

               
               1-528, gnl|loxAfr1|scaffold_29547 (5585-5037)
               

               
               1-528, gnl|mm7|chr15 (37478064-37478551)
               

               
               1-528, gnl|Mm7|chr15 (37478695-37478232)
               

               
               1-528, gnl|monDom2|scaffold_3 (61683137-61682590)
               

               
               1-528, gnl|oryCun1|scaffold_212317 (73865-73325)
               

               
               1-528, gnl|panTro1|chr7 (105120721-105121272)
               

               
               1-528, gnl|rheMac2|chr8 (104187010-104187570)
               

               
               1-528, gnl|rn3|chr7 (72897116-72897598)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-528, gnl|bosTau2|chr14 (41241583-41242101)
               

               
               1-528, gnl|canFam2|chr13 (6385603-6386157)
               

               
               1-528, gnl|dasNov1|scaffold_588 (86915-87474)
               

               
               1-528, gnl|hg17|chr8 (102769196-102769747)
               

               
               1-528, gnl|Hg17|chr8 (102769894-102769389)
               

               
               1-528, gnl|loxAfr1|scaffold_29547 (5585-5037)
               

               
               1-528, gnl|mm7|chr15 (37478064-37478551)
               

               
               1-528, gnl|Mm7|chr15 (37478695-37478232)
               

               
               1-528, gnl|monDom2|scaffold_3 (61683137-61682590)
               

               
               1-528, gnl|oryCun1|scaffold_212317 (73865-73325)
               

               
               1-528, gnl|panTro1|chr7 (105120721-105121272)
               

               
               1-528, gnl|rheMac2|chr8 (104187010-104187570)
               

               
               1-528, gnl|rn3|chr7 (72897116-72897598)

	1-528, gnl\|bosTau2\|chr14 (41241583-41242101)
	1-528, gnl\|canFam2\|chr13 (6385603-6386157)
	1-528, gnl\|dasNov1\|scaffold_588 (86915-87474)
	1-528, gnl\|hg17\|chr8 (102769196-102769747)
	1-528, gnl\|Hg17\|chr8 (102769894-102769389)
	1-528, gnl\|loxAfr1\|scaffold_29547 (5585-5037)
	1-528, gnl\|mm7\|chr15 (37478064-37478551)
	1-528, gnl\|Mm7\|chr15 (37478695-37478232)
	1-528, gnl\|monDom2\|scaffold_3 (61683137-61682590)
	1-528, gnl\|oryCun1\|scaffold_212317 (73865-73325)
	1-528, gnl\|panTro1\|chr7 (105120721-105121272)
	1-528, gnl\|rheMac2\|chr8 (104187010-104187570)
	1-528, gnl\|rn3\|chr7 (72897116-72897598)