Non-Coding RNA Search

Ss1.1-Pig2-113B13.5

Sequence:


               
               AACTTTTAAAAAAATCCAAAAGATTCTGAATTCTGAAACATATTTGGCCTCAGGGGTTTG
AATGATGGATTCTGGAGCTGCGCTATAATTTGTATCCTGCATGGGGAAATAAAAATCCCA
TTTCTAGGGTGAAGAGTACCCCGGTGCCCCAGGAAAGCCTATTTTCCACATGCTGCAGCC
TCTCTGTATACAGCACCTCACTGAGCTCAAGTCTGTGAATGAAAAGAAATTCCTGGCTCC
TTCCCGTGAGAATTCAGCGGGAGCCTCTTCCTCTGCACATGTGTGTTTGCCTGAAGAAAA
CCCCGAACAAGGGCATAACCAGCTAAGAGTCTCCTTCCTTCTTCAAGAAACAGCGGAGGA
ATGCAGCAGAGCCACGTACAGGCATTGATCAGCTCTCTCTCCTGACCTCATGTGCAGATC
ACACCAAAGTAGGTAGTGGTAATACCTGCCTTATCCGTCTCACTGAAGCTTCTCATGTCA
ACAGAGTTCTCCATCTTATCATCCCTCCCTCTGTACGCTTGGCTGATGAAATCTGTCTGA
ATAAGGCCTATGTGCTTTGGGTGGCCCACAACAAACCTCTAAGGGCGGTAAATTGCATCT
TGGAAATGCAGGCTCTTTGGAACTGTGTCTGCATTCAGACTCCCGGGGATTTCAATGCAG
AGGGACTTGCAAGGTTTGCATTTTTCATTCATTAACGCTGTGTTGCTGCCAAACTTCTCT
TCCTGTTAGTCATCCAGGGAGGAGGGCTCCACACAGCGGGAGGGTCATAAATTATTGTGC
GGCTCAAGCCAGCCCGAATGGAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACTTTTAAAAAAATCCAAAAGATTCTGAATTCTGAAACATATTTGGCCTCAGGGGTTTG
AATGATGGATTCTGGAGCTGCGCTATAATTTGTATCCTGCATGGGGAAATAAAAATCCCA
TTTCTAGGGTGAAGAGTACCCCGGTGCCCCAGGAAAGCCTATTTTCCACATGCTGCAGCC
TCTCTGTATACAGCACCTCACTGAGCTCAAGTCTGTGAATGAAAAGAAATTCCTGGCTCC
TTCCCGTGAGAATTCAGCGGGAGCCTCTTCCTCTGCACATGTGTGTTTGCCTGAAGAAAA
CCCCGAACAAGGGCATAACCAGCTAAGAGTCTCCTTCCTTCTTCAAGAAACAGCGGAGGA
ATGCAGCAGAGCCACGTACAGGCATTGATCAGCTCTCTCTCCTGACCTCATGTGCAGATC
ACACCAAAGTAGGTAGTGGTAATACCTGCCTTATCCGTCTCACTGAAGCTTCTCATGTCA
ACAGAGTTCTCCATCTTATCATCCCTCCCTCTGTACGCTTGGCTGATGAAATCTGTCTGA
ATAAGGCCTATGTGCTTTGGGTGGCCCACAACAAACCTCTAAGGGCGGTAAATTGCATCT
TGGAAATGCAGGCTCTTTGGAACTGTGTCTGCATTCAGACTCCCGGGGATTTCAATGCAG
AGGGACTTGCAAGGTTTGCATTTTTCATTCATTAACGCTGTGTTGCTGCCAAACTTCTCT
TCCTGTTAGTCATCCAGGGAGGAGGGCTCCACACAGCGGGAGGGTCATAAATTATTGTGC
GGCTCAAGCCAGCCCGAATGGAAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               687-804, - strand, RNAz p=0.979597

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               687-804, - strand, RNAz p=0.979597

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               689-818, + strand, RNAmicro p=0.999826

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               689-818, + strand, RNAmicro p=0.999826

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-804, gnl|bosTau2|chr17 (8663548-8662725)
               

               
               1-804, gnl|Hg17|chr4 (144582268-144581421)
               

               
               1-804, gnl|Mm7|chr8 (79451767-79452642)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-804, gnl|bosTau2|chr17 (8663548-8662725)
               

               
               1-804, gnl|Hg17|chr4 (144582268-144581421)
               

               
               1-804, gnl|Mm7|chr8 (79451767-79452642)

	1-804, gnl\|bosTau2\|chr17 (8663548-8662725)
	1-804, gnl\|Hg17\|chr4 (144582268-144581421)
	1-804, gnl\|Mm7\|chr8 (79451767-79452642)