Non-Coding RNA Search

Ss1.1-Pig2-113G07.5

Sequence:


               
               CACAATTACACGGGGAATGTGTTCCTAGAGATGTCAGCCTACAAAGGACACAATCTCTCT
TCTTCAAATTCCTCCCCAAAATGTCCTTTCCCAACAGCTCTCCTGCTGCTAATACTTTTT
TAGTAGATTCCTTGATCAGTGCCTGCAGGAGTGACAGTTTTTATTCGAGCAGCGCCAGCA
TGTACATGCCACCACCTAGCGCAGACATGGGGACCTATGGAATGCAAACCTGTGGACTGC
TCCCGTCTCTGGCCAAAAGAGAAGTGAACCACCAAAATATGGGTATGAATGTGCATCCTT
ATATACCTCAAGTAGACAGTTGGACAGACCCGAACAGATCTTGTCGAATAGAGCAACCTG
TTACACAGCAAGTCCCCACTTGCTCCTTCACCACCAACATTAAGGAAGAATCCAATTGCT
GCATGTATTCTGATAAGCGCAACAAACTCATTTCTGCTGAGGTCCCTTCGTACCAGAGGC
TGGTCCCTGAGTCCTGTCCCGTTGAGAACCCTGAGGTTCCTGTCCCTGGATATTTTAGAC
TGAGTCAGACCTCTGAGGTCTCCGAAAACCCAAGAGTACAATAACAGCCCCGAAGGCAGC
TCCACAGTCATGCTCCAGCTCAACCCTCGCGGCGCGGCCAAGCCGCAGCTCTCGGCCGCC
CAGCTGCAGATGGAAAAGAAGATGAACGAGCCCGCGAGTGGCCCGGAGCCCAACAAAGTC
TCCCAGGTGGAGAGCCCCGAGGCCAAGGGTGGCCTTCCGGAAGAGAGGAGCTGCCTGGCT
GAGGTCTCCGTGTCCAGTCCTGAAGTACAGGAGAAGGAAAGCAAAGAGGAAATCAAGTCT
GATACTCCAACCAGCAATTGGCTCACTGCAAAGAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACAATTACACGGGGAATGTGTTCCTAGAGATGTCAGCCTACAAAGGACACAATCTCTCT
TCTTCAAATTCCTCCCCAAAATGTCCTTTCCCAACAGCTCTCCTGCTGCTAATACTTTTT
TAGTAGATTCCTTGATCAGTGCCTGCAGGAGTGACAGTTTTTATTCGAGCAGCGCCAGCA
TGTACATGCCACCACCTAGCGCAGACATGGGGACCTATGGAATGCAAACCTGTGGACTGC
TCCCGTCTCTGGCCAAAAGAGAAGTGAACCACCAAAATATGGGTATGAATGTGCATCCTT
ATATACCTCAAGTAGACAGTTGGACAGACCCGAACAGATCTTGTCGAATAGAGCAACCTG
TTACACAGCAAGTCCCCACTTGCTCCTTCACCACCAACATTAAGGAAGAATCCAATTGCT
GCATGTATTCTGATAAGCGCAACAAACTCATTTCTGCTGAGGTCCCTTCGTACCAGAGGC
TGGTCCCTGAGTCCTGTCCCGTTGAGAACCCTGAGGTTCCTGTCCCTGGATATTTTAGAC
TGAGTCAGACCTCTGAGGTCTCCGAAAACCCAAGAGTACAATAACAGCCCCGAAGGCAGC
TCCACAGTCATGCTCCAGCTCAACCCTCGCGGCGCGGCCAAGCCGCAGCTCTCGGCCGCC
CAGCTGCAGATGGAAAAGAAGATGAACGAGCCCGCGAGTGGCCCGGAGCCCAACAAAGTC
TCCCAGGTGGAGAGCCCCGAGGCCAAGGGTGGCCTTCCGGAAGAGAGGAGCTGCCTGGCT
GAGGTCTCCGTGTCCAGTCCTGAAGTACAGGAGAAGGAAAGCAAAGAGGAAATCAAGTCT
GATACTCCAACCAGCAATTGGCTCACTGCAAAGAGT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61821219|ref|XP_592661.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61821219|ref|XP_592661.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-159, - strand, RNAz p=0.898888

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-159, - strand, RNAz p=0.898888

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-826, gnl|bosTau2|chr2 (17006128-17005304)
               

               
               1-826, gnl|Hg17|chr2 (176806989-176807813)
               

               
               1-826, gnl|Mm7|chr2 (74535616-74536440)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-826, gnl|bosTau2|chr2 (17006128-17005304)
               

               
               1-826, gnl|Hg17|chr2 (176806989-176807813)
               

               
               1-826, gnl|Mm7|chr2 (74535616-74536440)

	1-826, gnl\|bosTau2\|chr2 (17006128-17005304)
	1-826, gnl\|Hg17\|chr2 (176806989-176807813)
	1-826, gnl\|Mm7\|chr2 (74535616-74536440)