Non-Coding RNA Search

Ss1.1-Pig2-113N23.5

Sequence:


               
               GGACTCTCCTATCTCTCTTTCTGTCCGCCTCCTCCAAAGTCTCCAGACTCTCCCTCTCTG
CCAACTCACACCCTCCTTGCCAGGCCTCTCAGCTCTCTCTTGTCACGACGCTGCCCCTAT
GCCACCCCTATCCTCACCCCACAGCCAGGAAAATGCCCGAGGCCTCGCCCTCACCCAAAG
GTACTGCGGCTTTATCATGTGGCTCTGTCTGATCTTCTCTTCCCTCTTCTATCTCAACCT
GGCAAGGGGGGGAGAAAAGGAGGTGAGGCCTTCCGGGCAGGGGTGTTCACTCATCACCCC
AGGGAGAGAAAGGTGGGGCCCGTGCACCCGCCAGGTGAGAGGTCCCTCTGACCTCTGCCT
GCCCCACAGGTGCTGCTGCTCCTGACGTGGTCCCTTCGAGCCCTGATGAGAGCAGTGGCC
ACACCCCACCCTCCCCCACCCCTGTGTGCACCTCCAGGCCCCTGGGAGGCGGAGACACCT
GCAGCACGAGGGCTGGGAAGTCAGGGCAGACCCCTCCCAAGAGGCTGTCTCTGACCCCAG
GAATGGGCACATAAATGCCCAGGGCAGTGGCTTTGGGGCTGCCAGGGCCTCCCAGAGCTG
GTGAGAGAATGAGCAGGCTCTTGTGCTGTGTGCAGGTGAGGCCCCTGGGCTTCCTCAAGC
CCTCCTCCTTGACGAAGGTTTCCAGTCACTTCAAGACGCACCAGGACTCGCTGCCCCGGC
TGCCCGTGCCCCCGCTCCAGCAGACCCTGGACCATTATCTCAAGGCACTGCAGCCCATCG
TCAGCGAAGAGGAGTGGGCCCAAACCAAGCAGCTGGTGGAAGAGTTTCAGTCTCCAGGGG
GCGTAGGGGAGCGCCTGCAGAAGGGGCTGGAGCGCAGGGCCAGGAAGACGGAGAACTGGC
TGTCTGAGTGGTGGCTCAAAACAGCTTACCTCCAGTACCGCCAGCCCCTGGTCATCTATT
CCAGCCCGGGCATGGCGCTGCCCAAGCAGGACTTTGTGGATCTGCAGGGACAGCTCCGGT
TCGCTGCCAAATTAATTGAGGGTGTGTTGGATTTCAAGGCCATGATTGACAACGAGACCC
TGCCCGGGTCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGACTCTCCTATCTCTCTTTCTGTCCGCCTCCTCCAAAGTCTCCAGACTCTCCCTCTCTG
CCAACTCACACCCTCCTTGCCAGGCCTCTCAGCTCTCTCTTGTCACGACGCTGCCCCTAT
GCCACCCCTATCCTCACCCCACAGCCAGGAAAATGCCCGAGGCCTCGCCCTCACCCAAAG
GTACTGCGGCTTTATCATGTGGCTCTGTCTGATCTTCTCTTCCCTCTTCTATCTCAACCT
GGCAAGGGGGGGAGAAAAGGAGGTGAGGCCTTCCGGGCAGGGGTGTTCACTCATCACCCC
AGGGAGAGAAAGGTGGGGCCCGTGCACCCGCCAGGTGAGAGGTCCCTCTGACCTCTGCCT
GCCCCACAGGTGCTGCTGCTCCTGACGTGGTCCCTTCGAGCCCTGATGAGAGCAGTGGCC
ACACCCCACCCTCCCCCACCCCTGTGTGCACCTCCAGGCCCCTGGGAGGCGGAGACACCT
GCAGCACGAGGGCTGGGAAGTCAGGGCAGACCCCTCCCAAGAGGCTGTCTCTGACCCCAG
GAATGGGCACATAAATGCCCAGGGCAGTGGCTTTGGGGCTGCCAGGGCCTCCCAGAGCTG
GTGAGAGAATGAGCAGGCTCTTGTGCTGTGTGCAGGTGAGGCCCCTGGGCTTCCTCAAGC
CCTCCTCCTTGACGAAGGTTTCCAGTCACTTCAAGACGCACCAGGACTCGCTGCCCCGGC
TGCCCGTGCCCCCGCTCCAGCAGACCCTGGACCATTATCTCAAGGCACTGCAGCCCATCG
TCAGCGAAGAGGAGTGGGCCCAAACCAAGCAGCTGGTGGAAGAGTTTCAGTCTCCAGGGG
GCGTAGGGGAGCGCCTGCAGAAGGGGCTGGAGCGCAGGGCCAGGAAGACGGAGAACTGGC
TGTCTGAGTGGTGGCTCAAAACAGCTTACCTCCAGTACCGCCAGCCCCTGGTCATCTATT
CCAGCCCGGGCATGGCGCTGCCCAAGCAGGACTTTGTGGATCTGCAGGGACAGCTCCGGT
TCGCTGCCAAATTAATTGAGGGTGTGTTGGATTTCAAGGCCATGATTGACAACGAGACCC
TGCCCGGGTCTG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61822077|ref|XP_608812.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61822077|ref|XP_608812.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               193-908, - strand, RNAz p=0.999516

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               193-908, - strand, RNAz p=0.999516

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-908, gnl|bosTau2|chr11 (78890958-78890065)
               

               
               1-908, gnl|Hg17|chr9 (128950545-128949638)
               

               
               1-908, gnl|Mm7|chr2 (30421121-30420285)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-908, gnl|bosTau2|chr11 (78890958-78890065)
               

               
               1-908, gnl|Hg17|chr9 (128950545-128949638)
               

               
               1-908, gnl|Mm7|chr2 (30421121-30420285)

	1-908, gnl\|bosTau2\|chr11 (78890958-78890065)
	1-908, gnl\|Hg17\|chr9 (128950545-128949638)
	1-908, gnl\|Mm7\|chr2 (30421121-30420285)