Non-Coding RNA Search

Ss1.1-Pig2-113O10.5

Sequence:


               
               GCGTCCGGCTGGCCACGCGGAAGGCCAAGGCCATGGCCATAGCCACGTCGGCTCAGCTGG
CCCGGGCTCTGTACGACAACACTGCTGAGTCCCCACAGGAGCTGTCCTTCCGCCGAGGGG
ATGTCCTCCGAGTACTGCAGAGGGAAGGCGCTGGTGGCCTGGACGGCTGGTGCCTCTGCT
CCCTGCATGGCCAGCAGGGCATTGTGCCCGCCAACAGAGTGAAGCTCCTTCCTGCCGGCC
CAGCACCCAAGCCTGGCCTCTCCCAGGTGCCCCCAGCCCATCCTGGCTCACCACATCCAG
CTCCAGAGAACAGCAACGAGGACCAGGAGGTGTATGTGGTGCCACCCCCAGCTCGGCCCT
GTCCTACCTTGGTATCTCCACCTGGACCCTGTCCGCCCTCCCCTGATCCCATCTACAAGG
TCCCCAGAGGCAGTGGGACACAACTGGCTGTCCCTGGAGATGCCTTGGAGGTCTATGATG
TGCCCCCCACTGCCCTCCGAATTCCTTCCAATGGCCCCTATGACTCCCCAGCCTCCTTTT
CCCGCCCTCTGGCCCGGGTGGCCCCAGAGCTCCCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGTCCGGCTGGCCACGCGGAAGGCCAAGGCCATGGCCATAGCCACGTCGGCTCAGCTGG
CCCGGGCTCTGTACGACAACACTGCTGAGTCCCCACAGGAGCTGTCCTTCCGCCGAGGGG
ATGTCCTCCGAGTACTGCAGAGGGAAGGCGCTGGTGGCCTGGACGGCTGGTGCCTCTGCT
CCCTGCATGGCCAGCAGGGCATTGTGCCCGCCAACAGAGTGAAGCTCCTTCCTGCCGGCC
CAGCACCCAAGCCTGGCCTCTCCCAGGTGCCCCCAGCCCATCCTGGCTCACCACATCCAG
CTCCAGAGAACAGCAACGAGGACCAGGAGGTGTATGTGGTGCCACCCCCAGCTCGGCCCT
GTCCTACCTTGGTATCTCCACCTGGACCCTGTCCGCCCTCCCCTGATCCCATCTACAAGG
TCCCCAGAGGCAGTGGGACACAACTGGCTGTCCCTGGAGATGCCTTGGAGGTCTATGATG
TGCCCCCCACTGCCCTCCGAATTCCTTCCAATGGCCCCTATGACTCCCCAGCCTCCTTTT
CCCGCCCTCTGGCCCGGGTGGCCCCAGAGCTCCCTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               129-288, - strand, RNAz p=0.940166

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               129-288, - strand, RNAz p=0.940166

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               117-209, + strand, RNAmicro p=0.948785

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               117-209, + strand, RNAmicro p=0.948785

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               50-332, gnl|bosTau2|chr10 (13768068-13768350)
               

               
               50-332, gnl|Hg17|chr14 (22899883-22899601)
               

               
               50-332, gnl|Mm7|chr14 (49787881-49787599)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               50-332, gnl|bosTau2|chr10 (13768068-13768350)
               

               
               50-332, gnl|Hg17|chr14 (22899883-22899601)
               

               
               50-332, gnl|Mm7|chr14 (49787881-49787599)

	50-332, gnl\|bosTau2\|chr10 (13768068-13768350)
	50-332, gnl\|Hg17\|chr14 (22899883-22899601)
	50-332, gnl\|Mm7\|chr14 (49787881-49787599)