Non-Coding RNA Search

Ss1.1-Pig2-114H18.5

Sequence:


               
               GGAGTGTTCTCTCAGAGATCATGGGAAGAAGAATGAAAAATTTACTTAAAATCCTCCAAC
AAGATCTTGATTGTATCTTAGATACATTAACATTTTGAAGGCTAATTTCTGAGACTATTA
CAGATCCCCTGAAGAAAAGTCTGAAGCTGTTCATTTTGGTACATAAGAGAGAAGTGAGCT
GTCAGCTTTTTCTCAACTGGTTATTAAGTACTTTTTCAGAATCAGCTACCATTTGGGGCT
TAAATCATGAAATTTTAAAACATAAGAAGATAGAATCACCTCAATCTAGGGGGGGAAGAT
ATTTTTAAATTTTTCCTGGAGAGAAACAGTCTGAGAATCCTGAGATCACCATGTCCTTCA
AAGAGAAAGAACACTTGGATTTGGAAACCTCTGAGTCATTCACAGACAAGAAAACTGCTT
GTCCAAGGGTCTCTGCTTGGTCCTCAAAGGAAAACAACCCACCAAAGTCCACAGCACCAC
AATTGGTTGAGAATGTTGAATATGAATTTCTAGCAACTAGAAATACTGAGTATTTACAGG
ATGGATGGAGATATGAAGAGCCAGATGATTCTTTATACTTAGGGAGAAGAGGACTATCTA
GAAATCTTTTGGATACTCTGAAGATGCAGAAACCACCGTGGGAAGGAGGAGGCTTATGGA
TGNACACCAGAGTGCCTTGTCCAATTATGGGGGAAG------------GTATTCGGGAAA
AACGGGAGNAGTTCTCTGGTGGACCACCATTCCTGNAAGGTTCCAGGAAACTGGGCGGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGTGTTCTCTCAGAGATCATGGGAAGAAGAATGAAAAATTTACTTAAAATCCTCCAAC
AAGATCTTGATTGTATCTTAGATACATTAACATTTTGAAGGCTAATTTCTGAGACTATTA
CAGATCCCCTGAAGAAAAGTCTGAAGCTGTTCATTTTGGTACATAAGAGAGAAGTGAGCT
GTCAGCTTTTTCTCAACTGGTTATTAAGTACTTTTTCAGAATCAGCTACCATTTGGGGCT
TAAATCATGAAATTTTAAAACATAAGAAGATAGAATCACCTCAATCTAGGGGGGGAAGAT
ATTTTTAAATTTTTCCTGGAGAGAAACAGTCTGAGAATCCTGAGATCACCATGTCCTTCA
AAGAGAAAGAACACTTGGATTTGGAAACCTCTGAGTCATTCACAGACAAGAAAACTGCTT
GTCCAAGGGTCTCTGCTTGGTCCTCAAAGGAAAACAACCCACCAAAGTCCACAGCACCAC
AATTGGTTGAGAATGTTGAATATGAATTTCTAGCAACTAGAAATACTGAGTATTTACAGG
ATGGATGGAGATATGAAGAGCCAGATGATTCTTTATACTTAGGGAGAAGAGGACTATCTA
GAAATCTTTTGGATACTCTGAAGATGCAGAAACCACCGTGGGAAGGAGGAGGCTTATGGA
TGNACACCAGAGTGCCTTGTCCAATTATGGGGGAAG------------GTATTCGGGAAA
AACGGGAGNAGTTCTCTGGTGGACCACCATTCCTGNAAGGTTCCAGGAAACTGGGCGGTG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               284-431, - strand, RNAz p=0.938554

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               284-431, - strand, RNAz p=0.938554

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               249-656, gnl|bosTau2|chr20 (19689866-19689457)
               

               
               249-656, gnl|canFam2|chr4 (71746135-71745509)
               

               
               249-656, gnl|dasNov1|scaffold_15607 (16217-15679)
               

               
               249-656, gnl|echTel1|scaffold_311989 (48153-48697)
               

               
               249-656, gnl|hg17|chr5 (40878995-40879533)
               

               
               249-656, gnl|Hg17|chr5 (40879010-40879425)
               

               
               249-656, gnl|mm7|chr15 (4930341-4929814)
               

               
               249-656, gnl|Mm7|chr15 (4930311-4929914)
               

               
               249-656, gnl|monDom2|scaffold_20 (30153442-30152906)
               

               
               249-656, gnl|oryCun1|scaffold_161832 (527-1085)
               

               
               249-656, gnl|panTro1|chr4 (75669903-75669365)
               

               
               249-656, gnl|rheMac2|chr6 (40683119-40683660)
               

               
               249-656, gnl|rn3|chr2 (54217420-54216891)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               249-656, gnl|bosTau2|chr20 (19689866-19689457)
               

               
               249-656, gnl|canFam2|chr4 (71746135-71745509)
               

               
               249-656, gnl|dasNov1|scaffold_15607 (16217-15679)
               

               
               249-656, gnl|echTel1|scaffold_311989 (48153-48697)
               

               
               249-656, gnl|hg17|chr5 (40878995-40879533)
               

               
               249-656, gnl|Hg17|chr5 (40879010-40879425)
               

               
               249-656, gnl|mm7|chr15 (4930341-4929814)
               

               
               249-656, gnl|Mm7|chr15 (4930311-4929914)
               

               
               249-656, gnl|monDom2|scaffold_20 (30153442-30152906)
               

               
               249-656, gnl|oryCun1|scaffold_161832 (527-1085)
               

               
               249-656, gnl|panTro1|chr4 (75669903-75669365)
               

               
               249-656, gnl|rheMac2|chr6 (40683119-40683660)
               

               
               249-656, gnl|rn3|chr2 (54217420-54216891)

	249-656, gnl\|bosTau2\|chr20 (19689866-19689457)
	249-656, gnl\|canFam2\|chr4 (71746135-71745509)
	249-656, gnl\|dasNov1\|scaffold_15607 (16217-15679)
	249-656, gnl\|echTel1\|scaffold_311989 (48153-48697)
	249-656, gnl\|hg17\|chr5 (40878995-40879533)
	249-656, gnl\|Hg17\|chr5 (40879010-40879425)
	249-656, gnl\|mm7\|chr15 (4930341-4929814)
	249-656, gnl\|Mm7\|chr15 (4930311-4929914)
	249-656, gnl\|monDom2\|scaffold_20 (30153442-30152906)
	249-656, gnl\|oryCun1\|scaffold_161832 (527-1085)
	249-656, gnl\|panTro1\|chr4 (75669903-75669365)
	249-656, gnl\|rheMac2\|chr6 (40683119-40683660)
	249-656, gnl\|rn3\|chr2 (54217420-54216891)