Non-Coding RNA Search

Ss1.1-Pig2-115C21.5

Sequence:


               
               CTGTCCAGGATCACACAGCAAAGAAGTGTGTCCATGCACAAACCAGAGCTCTTCCCACCC
CCACCCGCAAGGAGCCACGGGGGCTCTGGAGGGCCCCTGCCCTCTCCAGGCCCAGCAGGG
CGTCTGCCTCTCTCTTATCTCAGCCCTGGCTGCCTGCTAGTCCCGCCCCCTCGGGGGAGC
TGCCACTTGGAGGCGCCTGGCCGGGAAGGGCCTGGTCAGCTGTGTCCGGTGGAGGCAGCT
GCTGACCCAGCTGTGGACTGTGCCGGGGCGGAAGAAGGGGGGGCAGGAGCCCTGGGCCCC
CCGTGGCAGGGGCTGCATCATGTATCATTTCGGGGCAACCCTCTGGCCAGGAGTTGGCTC
CCTCTGTCTTCTGCTAGCTGGGGCCACCTGGGCTCCTTCACCCAACTCCCCCGACGCCAA
GTTTGAAAGCAAAGCGGCCCTGTTGGCAGCCCGCGGGCCTGAAGAGCTTCTGTGCTTCAC
CGAGCGGTTGGAGGACTTGGTGTGCTTCTGGGAGGAAGCGGGAAGCGCTGGAGTAGGCCC
AGAAGACTACAGCTTCTCCTACCAGCTTGAGGGTGAGCCGTGGAAGCCATGCCACCTGCA
TCAAGGGCCCACGGCCCGCGGCTCGGTGCGTTTCTGGTGCTCGCTGCCTACAGCCGACAC
GTCGAGCTTCGTGCCCCTAGAGCTGCGCGTCACTGAGGTTTCCTCGGGCGCTCCACGCTA
CCACCGTATCATCGCCCCTTAGTGGCCGGGGCTGGAACAGTCCCTTATTCACTGCTGGAG
TGCGATCCCAAACACTGCTGAGAGGACACCGCTCCAAATCGGCACCAAGGCGTCGCGTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGTCCAGGATCACACAGCAAAGAAGTGTGTCCATGCACAAACCAGAGCTCTTCCCACCC
CCACCCGCAAGGAGCCACGGGGGCTCTGGAGGGCCCCTGCCCTCTCCAGGCCCAGCAGGG
CGTCTGCCTCTCTCTTATCTCAGCCCTGGCTGCCTGCTAGTCCCGCCCCCTCGGGGGAGC
TGCCACTTGGAGGCGCCTGGCCGGGAAGGGCCTGGTCAGCTGTGTCCGGTGGAGGCAGCT
GCTGACCCAGCTGTGGACTGTGCCGGGGCGGAAGAAGGGGGGGCAGGAGCCCTGGGCCCC
CCGTGGCAGGGGCTGCATCATGTATCATTTCGGGGCAACCCTCTGGCCAGGAGTTGGCTC
CCTCTGTCTTCTGCTAGCTGGGGCCACCTGGGCTCCTTCACCCAACTCCCCCGACGCCAA
GTTTGAAAGCAAAGCGGCCCTGTTGGCAGCCCGCGGGCCTGAAGAGCTTCTGTGCTTCAC
CGAGCGGTTGGAGGACTTGGTGTGCTTCTGGGAGGAAGCGGGAAGCGCTGGAGTAGGCCC
AGAAGACTACAGCTTCTCCTACCAGCTTGAGGGTGAGCCGTGGAAGCCATGCCACCTGCA
TCAAGGGCCCACGGCCCGCGGCTCGGTGCGTTTCTGGTGCTCGCTGCCTACAGCCGACAC
GTCGAGCTTCGTGCCCCTAGAGCTGCGCGTCACTGAGGTTTCCTCGGGCGCTCCACGCTA
CCACCGTATCATCGCCCCTTAGTGGCCGGGGCTGGAACAGTCCCTTATTCACTGCTGGAG
TGCGATCCCAAACACTGCTGAGAGGACACCGCTCCAAATCGGCACCAAGGCGTCGCGTAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|553281|gb|AAA52393.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|553281|gb|AAA52393.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               82-304, + strand, RNAz p=0.832606

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               82-304, + strand, RNAz p=0.832606

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_000121, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_000121, +

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               3-434, gnl|bosTau2|chr7 (11236890-11236450)
               

               
               3-434, gnl|Hg17|chr19 (11356199-11355769)
               


               
               571-732, gnl|bosTau2|chr7 (11235069-11234911)
               

               
               571-732, gnl|Hg17|chr19 (11353781-11353623)
               

               
               571-732, gnl|Mm7|chr9 (21840264-21840106)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-434, gnl|bosTau2|chr7 (11236890-11236450)
               

               
               3-434, gnl|Hg17|chr19 (11356199-11355769)
               


               
               571-732, gnl|bosTau2|chr7 (11235069-11234911)
               

               
               571-732, gnl|Hg17|chr19 (11353781-11353623)
               

               
               571-732, gnl|Mm7|chr9 (21840264-21840106)

	3-434, gnl\|bosTau2\|chr7 (11236890-11236450)
	3-434, gnl\|Hg17\|chr19 (11356199-11355769)

	571-732, gnl\|bosTau2\|chr7 (11235069-11234911)
	571-732, gnl\|Hg17\|chr19 (11353781-11353623)
	571-732, gnl\|Mm7\|chr9 (21840264-21840106)