Ss1.1-Pig2-115E22.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTCAAGGCCTCCAGCTGCAAGTCCAGCGTGTACTCCATACCCCGGGCAGGATCGAAGCGT CGGTAGCCATTCACCAGCTGCTGCTTCTGAAGGCGTAGGGCAGGGTGGTATCGGCGGTTG AGCTCCTCCAGGGCTGCCCCCAGAACGTCAGCCACATCGGCCTGGTCAGCCCCACGCAGC GGGCAGCGGGGTGAGCCATCAGCACAGGAGAAAGCGTGCTGCTCTGTGAAATAGTCCCAG CGTAGCACTTCAAAGCGGGAGGCCGGGCGGGATGGCGCCGGGATGCCCACGGGCCAGGCG GCTGCCCGTTCCCCATCGGCTGCAAGGCGGCTGGTGTTCTGCACCTCCCACTGTAATTCC TGGATCTCCTGGTATGTGCGTTCCAGCTCAGCTCGGGCAAAAGCCTTGTGCAGCTGGTAC ATGTGCACAGGGTCACGTACAGGGTGGGCCGTCAGGGCACTGCGGAATCGAGGGTCACCT TCTTGAACAGGCTCCCCAGGGCTCAGCTCCAGGTAGCTGTAGTGTACCCCCTCATGGTCG CCAGTGCAGCCCACCCCGGTGGCATCGAGGATGCAACGGCCCAGCCACTCATCCGGGCGC GCACTGACAATGTCGTTGCGACAGGCTTCCAGGTGGGGGCGCAGCTGCTGCAGCAGTGTG CGCGACAGCAGCACCCCAAAGCCACCGTGGCAATAGCGGCCTGGGGCGGGCTCGCCACTG ATGAAGTCCTGGGGCCGGCCCAGATAGAGATGGGCAGCGGCTGCCAGGCTGAGGTGGCCA GCTAGGCGCGCCAGTCCGTGCGCCTCTGTGTAGGTGGCATCGGGCACGAGGAAGAACCAG TCAAAGTCGTCGCCGTGTTGCTCCAGCAGGTGGCGCAGTGCCAGGTGCAGGTGCCCAATG GGCCGCTCCTCGCCCAGCGTCACCACGGCCATGCCCGGTGGTGCCCGGCGGCCCCGCGAG CCTGTCAGGAACACCACGCGCTCTAACCGGTGCCCTAGCGTGCGGTTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTCAAGGCCTCCAGCTGCAAGTCCAGCGTGTACTCCATACCCCGGGCAGGATCGAAGCGT CGGTAGCCATTCACCAGCTGCTGCTTCTGAAGGCGTAGGGCAGGGTGGTATCGGCGGTTG AGCTCCTCCAGGGCTGCCCCCAGAACGTCAGCCACATCGGCCTGGTCAGCCCCACGCAGC GGGCAGCGGGGTGAGCCATCAGCACAGGAGAAAGCGTGCTGCTCTGTGAAATAGTCCCAG CGTAGCACTTCAAAGCGGGAGGCCGGGCGGGATGGCGCCGGGATGCCCACGGGCCAGGCG GCTGCCCGTTCCCCATCGGCTGCAAGGCGGCTGGTGTTCTGCACCTCCCACTGTAATTCC TGGATCTCCTGGTATGTGCGTTCCAGCTCAGCTCGGGCAAAAGCCTTGTGCAGCTGGTAC ATGTGCACAGGGTCACGTACAGGGTGGGCCGTCAGGGCACTGCGGAATCGAGGGTCACCT TCTTGAACAGGCTCCCCAGGGCTCAGCTCCAGGTAGCTGTAGTGTACCCCCTCATGGTCG CCAGTGCAGCCCACCCCGGTGGCATCGAGGATGCAACGGCCCAGCCACTCATCCGGGCGC GCACTGACAATGTCGTTGCGACAGGCTTCCAGGTGGGGGCGCAGCTGCTGCAGCAGTGTG CGCGACAGCAGCACCCCAAAGCCACCGTGGCAATAGCGGCCTGGGGCGGGCTCGCCACTG ATGAAGTCCTGGGGCCGGCCCAGATAGAGATGGGCAGCGGCTGCCAGGCTGAGGTGGCCA GCTAGGCGCGCCAGTCCGTGCGCCTCTGTGTAGGTGGCATCGGGCACGAGGAAGAACCAG TCAAAGTCGTCGCCGTGTTGCTCCAGCAGGTGGCGCAGTGCCAGGTGCAGGTGCCCAATG GGCCGCTCCTCGCCCAGCGTCACCACGGCCATGCCCGGTGGTGCCCGGCGGCCCCGCGAG CCTGTCAGGAACACCACGCGCTCTAACCGGTGCCCTAGCGTGCGGTTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 609-728, - strand, RNAz p=0.653869 | |
| 891-1008, - strand, RNAz p=0.564718 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 609-728, - strand, RNAz p=0.653869 | |
| 891-1008, - strand, RNAz p=0.564718 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-353, gnl|bosTau2|chr2 (68780944-68780592) | |
| 1-353, gnl|canFam2|chr37 (29049650-29050050) | |
| 1-353, gnl|danRer3|chrUn (28696461-28696838) | |
| 1-353, gnl|dasNov1|scaffold_47634 (6837-7236) | |
| 1-353, gnl|echTel1|scaffold_267036 (4774-4399) | |
| 1-353, gnl|fr1|chrUn (3410827-3411219) | |
| 1-353, gnl|galGal2|chr7 (22907001-22906624) | |
| 1-353, gnl|hg17|chr2 (220230511-220230910) | |
| 1-353, gnl|Hg17|chr2 (220230520-220230872) | |
| 1-353, gnl|loxAfr1|scaffold_19096 (25789-25416) | |
| 1-353, gnl|mm7|chr1 (75702062-75702464) | |
| 1-353, gnl|Mm7|chr1 (75702071-75702423) | |
| 1-353, gnl|monDom2|scaffold_864 (10080-9683) | |
| 1-353, gnl|oryCun1|scaffold_208276 (104520-104148) | |
| 1-353, gnl|panTro1|chr13 (110395606-110396005) | |
| 1-353, gnl|rheMac2|chr12 (83388319-83388718) | |
| 1-353, gnl|rn3|chr9 (74898309-74898709) | |
| 1-353, gnl|tetNig1|chr6 (4859794-4860186) | |
| 1-353, gnl|xenTro1|scaffold_1262 (137922-137537) | |
| 530-1008, gnl|bosTau2|chr2 (68779555-68779077) | |
| 530-1008, gnl|Hg17|chr2 (220231842-220232320) | |
| 530-1008, gnl|Mm7|chr1 (75703438-75703916) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-353, gnl|bosTau2|chr2 (68780944-68780592) | |
| 1-353, gnl|canFam2|chr37 (29049650-29050050) | |
| 1-353, gnl|danRer3|chrUn (28696461-28696838) | |
| 1-353, gnl|dasNov1|scaffold_47634 (6837-7236) | |
| 1-353, gnl|echTel1|scaffold_267036 (4774-4399) | |
| 1-353, gnl|fr1|chrUn (3410827-3411219) | |
| 1-353, gnl|galGal2|chr7 (22907001-22906624) | |
| 1-353, gnl|hg17|chr2 (220230511-220230910) | |
| 1-353, gnl|Hg17|chr2 (220230520-220230872) | |
| 1-353, gnl|loxAfr1|scaffold_19096 (25789-25416) | |
| 1-353, gnl|mm7|chr1 (75702062-75702464) | |
| 1-353, gnl|Mm7|chr1 (75702071-75702423) | |
| 1-353, gnl|monDom2|scaffold_864 (10080-9683) | |
| 1-353, gnl|oryCun1|scaffold_208276 (104520-104148) | |
| 1-353, gnl|panTro1|chr13 (110395606-110396005) | |
| 1-353, gnl|rheMac2|chr12 (83388319-83388718) | |
| 1-353, gnl|rn3|chr9 (74898309-74898709) | |
| 1-353, gnl|tetNig1|chr6 (4859794-4860186) | |
| 1-353, gnl|xenTro1|scaffold_1262 (137922-137537) | |
| 530-1008, gnl|bosTau2|chr2 (68779555-68779077) | |
| 530-1008, gnl|Hg17|chr2 (220231842-220232320) | |
| 530-1008, gnl|Mm7|chr1 (75703438-75703916) |