Non-Coding RNA Search

Ss1.1-Pig2-115N12.5

Sequence:


               
               TCGCTCGTGCTATCCAAGGCAGTCGCGGCGTGACTTTTGTGATGGCCCTAAGAAGGCGAC
TGACGAAACTTCTCTTACGACTTCCATGGAGTGGGACACGCAGGTGGTGAAGGGGTCTTC
GCCGCTTGGCCCCGCTGGGCTCGGGCCGGAGGAGCCCCCAGCGGCCCCGCGGCTGCCATG
GTGGCTGCAGCCCGAGAGGTGCGCCGTGTTCCAGTGTGCGCATTGCTACGCTGTGCTCGC
CGACTCGGTGCACCTCGCATGGGACTTGTCGCGGTCCCTTGGAGCCGTGGCCTTCTCCAG
AGTCACAAATAACGTAGTTTTGGAAGCTCCTTTCCTAGTTGGCATTGAAGGTTCGCTCAA
AGGCAGCACTTACAACCTTTTATTCTGTAGTTCCTGTGTGATTCCCATTGGTTTCCATTT
GTATTCTACCCATGCTGCCCTGGCTGCCTTGAGAGGTCACTTTTGCCTTTCCAGTGACAA
AATGGTATGCTACCTCTTAAAAACAAAAGCCATAGTCAATGCAAGTGAGATGGATATTCA
CAACCTACCCCTACCAGAAAAGGTTGCAGAGCTGAAAGAGAAGATCATGTTAATGCATAC
TCGCTTAAATTCACTGATGAAGATTCTGAAGAAAGTGACTCCTGACCAGTCCAAGCCAGT
AGATTGATCCAGAATCAAAGCTTGAGTGTCAGGGTCAGGCCTTATTGCTGTCCTCAACAT
CAGGTGATAAAGCCAAGTGGTGGTATACAGAGAAATTAACATGGTTCAGATGTAGCTAGC
AAAATAGCAGATTCTTTCCATTGTACACTGCATAGAGGATATTTTCCTTTAAAAATATTT
TAAGCTGTCCAGAGATCCCTGGTGGCTCAGCAGGTTAAGGATCTGGCCTTATCACTGCTG
TGGCTTAGGTTGCTGCTGCAGCACAGGTTGGATTCCCTAGCCTGGGAACTTCTGTATGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGCTCGTGCTATCCAAGGCAGTCGCGGCGTGACTTTTGTGATGGCCCTAAGAAGGCGAC
TGACGAAACTTCTCTTACGACTTCCATGGAGTGGGACACGCAGGTGGTGAAGGGGTCTTC
GCCGCTTGGCCCCGCTGGGCTCGGGCCGGAGGAGCCCCCAGCGGCCCCGCGGCTGCCATG
GTGGCTGCAGCCCGAGAGGTGCGCCGTGTTCCAGTGTGCGCATTGCTACGCTGTGCTCGC
CGACTCGGTGCACCTCGCATGGGACTTGTCGCGGTCCCTTGGAGCCGTGGCCTTCTCCAG
AGTCACAAATAACGTAGTTTTGGAAGCTCCTTTCCTAGTTGGCATTGAAGGTTCGCTCAA
AGGCAGCACTTACAACCTTTTATTCTGTAGTTCCTGTGTGATTCCCATTGGTTTCCATTT
GTATTCTACCCATGCTGCCCTGGCTGCCTTGAGAGGTCACTTTTGCCTTTCCAGTGACAA
AATGGTATGCTACCTCTTAAAAACAAAAGCCATAGTCAATGCAAGTGAGATGGATATTCA
CAACCTACCCCTACCAGAAAAGGTTGCAGAGCTGAAAGAGAAGATCATGTTAATGCATAC
TCGCTTAAATTCACTGATGAAGATTCTGAAGAAAGTGACTCCTGACCAGTCCAAGCCAGT
AGATTGATCCAGAATCAAAGCTTGAGTGTCAGGGTCAGGCCTTATTGCTGTCCTCAACAT
CAGGTGATAAAGCCAAGTGGTGGTATACAGAGAAATTAACATGGTTCAGATGTAGCTAGC
AAAATAGCAGATTCTTTCCATTGTACACTGCATAGAGGATATTTTCCTTTAAAAATATTT
TAAGCTGTCCAGAGATCCCTGGTGGCTCAGCAGGTTAAGGATCTGGCCTTATCACTGCTG
TGGCTTAGGTTGCTGCTGCAGCACAGGTTGGATTCCCTAGCCTGGGAACTTCTGTATGCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               OIP5_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               OIP5_HUMAN

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               175-300, + strand, RNAz p=0.617974

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               175-300, + strand, RNAz p=0.617974

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               15-300, gnl|bosTau2|chr10 (26100774-26100489)
               

               
               15-300, gnl|Hg17|chr15 (39412014-39411729)
               

               
               15-300, gnl|Mm7|chr2 (119359273-119359006)
               


               
               364-492, gnl|bosTau2|chr10 (26097838-26097710)
               

               
               364-492, gnl|Hg17|chr15 (39399273-39399145)
               

               
               364-492, gnl|Mm7|chr2 (119356506-119356378)
               


               
               570-719, gnl|bosTau2|chr10 (26092894-26092745)
               

               
               570-719, gnl|Hg17|chr15 (39389341-39389189)
               

               
               570-719, gnl|Mm7|chr2 (119352706-119352576)
               


               
               720-840, gnl|bosTau2|chr10 (26091340-26091219)

Aligned organism(s): 10 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-300, gnl|bosTau2|chr10 (26100774-26100489)
               

               
               15-300, gnl|Hg17|chr15 (39412014-39411729)
               

               
               15-300, gnl|Mm7|chr2 (119359273-119359006)
               


               
               364-492, gnl|bosTau2|chr10 (26097838-26097710)
               

               
               364-492, gnl|Hg17|chr15 (39399273-39399145)
               

               
               364-492, gnl|Mm7|chr2 (119356506-119356378)
               


               
               570-719, gnl|bosTau2|chr10 (26092894-26092745)
               

               
               570-719, gnl|Hg17|chr15 (39389341-39389189)
               

               
               570-719, gnl|Mm7|chr2 (119352706-119352576)
               


               
               720-840, gnl|bosTau2|chr10 (26091340-26091219)

	15-300, gnl\|bosTau2\|chr10 (26100774-26100489)
	15-300, gnl\|Hg17\|chr15 (39412014-39411729)
	15-300, gnl\|Mm7\|chr2 (119359273-119359006)

	364-492, gnl\|bosTau2\|chr10 (26097838-26097710)
	364-492, gnl\|Hg17\|chr15 (39399273-39399145)
	364-492, gnl\|Mm7\|chr2 (119356506-119356378)

	570-719, gnl\|bosTau2\|chr10 (26092894-26092745)
	570-719, gnl\|Hg17\|chr15 (39389341-39389189)
	570-719, gnl\|Mm7\|chr2 (119352706-119352576)

	720-840, gnl\|bosTau2\|chr10 (26091340-26091219)