Non-Coding RNA Search

Ss1.1-Pig2-116C11.5

Sequence:


               
               CTCGAGCGGCGATTTGAGAGCCGGGACTCTTGCCTGCGGGCCTTGACCAGCCGTGGCAAT
GAACTTGAATCCATCGCCTTCCGCAGTGAAGACATCACTGGCCAGCTGGGTAACAACGAT
GACTTGATCCTCTCCTGCTGCCTCCACTACTGCAAAGACAAGGCTAAGGACTTCATGCCC
ACCAACAAAGAGGAGCCAATCCGGCTGCTGCGGGAGGTGGTGCTGTTGACCGATGACCGG
AACCTGCGTGTGAAAGCGCTGACCAGGAATGTGCCTGTGCGGGACATCCCGGCCTTCCTC
ACGTGGGCCCAGGTGGGCTGAGGGGGCTGCAGTGGGGCCCGCCCCTACGGAACCATTCCT
GAGAGGCCACCAGGCGCCCAGTGTAGCACAGAAGATGCCCACGTGCCTGAGCCACCAATC
CACCCAGACAATAAACCATCCTCTTCCAACCCACGCCGTGGCCGTGCTGTGGGGGAGCTG
CTCCTCACAGAGCCCCTCCCAAGGGTCGGGCGGAAGCTGCCGGGACCCTCCTGGGCTGCC
GGATTTAGCAGGGAGGTGGCTAGCTGCATTAACCGCATGCAGGTGAGCCGGGAAGCCGCC
CATGCTCGGCCTCTCTCCCTCCCCCTGTCCAGGTCCGGGGCTGAGGGAAGGCCTTCCTAG
CCCGGGACTCGGCCGCTTTCTCAGCTGGAGGTGGGGCAGGGGGTAGGGTTCCCATCGGAT
GCAGGCGAAGTCATGGGTCCCTCTCATCTTCTTCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCGAGCGGCGATTTGAGAGCCGGGACTCTTGCCTGCGGGCCTTGACCAGCCGTGGCAAT
GAACTTGAATCCATCGCCTTCCGCAGTGAAGACATCACTGGCCAGCTGGGTAACAACGAT
GACTTGATCCTCTCCTGCTGCCTCCACTACTGCAAAGACAAGGCTAAGGACTTCATGCCC
ACCAACAAAGAGGAGCCAATCCGGCTGCTGCGGGAGGTGGTGCTGTTGACCGATGACCGG
AACCTGCGTGTGAAAGCGCTGACCAGGAATGTGCCTGTGCGGGACATCCCGGCCTTCCTC
ACGTGGGCCCAGGTGGGCTGAGGGGGCTGCAGTGGGGCCCGCCCCTACGGAACCATTCCT
GAGAGGCCACCAGGCGCCCAGTGTAGCACAGAAGATGCCCACGTGCCTGAGCCACCAATC
CACCCAGACAATAAACCATCCTCTTCCAACCCACGCCGTGGCCGTGCTGTGGGGGAGCTG
CTCCTCACAGAGCCCCTCCCAAGGGTCGGGCGGAAGCTGCCGGGACCCTCCTGGGCTGCC
GGATTTAGCAGGGAGGTGGCTAGCTGCATTAACCGCATGCAGGTGAGCCGGGAAGCCGCC
CATGCTCGGCCTCTCTCCCTCCCCCTGTCCAGGTCCGGGGCTGAGGGAAGGCCTTCCTAG
CCCGGGACTCGGCCGCTTTCTCAGCTGGAGGTGGGGCAGGGGGTAGGGTTCCCATCGGAT
GCAGGCGAAGTCATGGGTCCCTCTCATCTTCTTCAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61880911|ref|XP_604844.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61880911|ref|XP_604844.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               265-501, - strand, RNAz p=0.706884
               

               
               541-657, + strand, RNAz p=0.899966

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               265-501, - strand, RNAz p=0.706884
               

               
               541-657, + strand, RNAz p=0.899966

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_017575, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_017575, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-109, gnl|bosTau2|chr19 (17622138-17622030)
               

               
               1-109, gnl|Hg17|chr17 (1915619-1915511)
               

               
               1-109, gnl|Mm7|chr11 (75240854-75240962)
               


               
               186-751, gnl|bosTau2|chr19 (17618548-17617983)
               

               
               186-751, gnl|Hg17|chr17 (1911671-1911102)
               

               
               186-751, gnl|Mm7|chr11 (75244389-75244952)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-109, gnl|bosTau2|chr19 (17622138-17622030)
               

               
               1-109, gnl|Hg17|chr17 (1915619-1915511)
               

               
               1-109, gnl|Mm7|chr11 (75240854-75240962)
               


               
               186-751, gnl|bosTau2|chr19 (17618548-17617983)
               

               
               186-751, gnl|Hg17|chr17 (1911671-1911102)
               

               
               186-751, gnl|Mm7|chr11 (75244389-75244952)

	265-501, - strand, RNAz p=0.706884
	541-657, + strand, RNAz p=0.899966

	1-109, gnl\|bosTau2\|chr19 (17622138-17622030)
	1-109, gnl\|Hg17\|chr17 (1915619-1915511)
	1-109, gnl\|Mm7\|chr11 (75240854-75240962)

	186-751, gnl\|bosTau2\|chr19 (17618548-17617983)
	186-751, gnl\|Hg17\|chr17 (1911671-1911102)
	186-751, gnl\|Mm7\|chr11 (75244389-75244952)