Non-Coding RNA Search

Ss1.1-Pig2-116F10.5

Sequence:


               
               CGAGAGCTGAGCCAGGAAGAGGCAGCTCAACCTAGAGACACTCCAGCCACCCCCCTGCGC
AGAGACCCAACGGGAGTCCAGGCACTGCCCCTCGCTGGCCCCACCTTTCACTTGGCGGGT
GCTGGAGCTCGGCTCCCAGGACTGCTCTGGACTGAGGGACGCCCGGGCCCCTCTGTGCCG
GCCATGGTGAGACATCGGAGGCCCTGGGGGTCCACCCCCCCAGCCTGACCACACTGCTTC
CCTAGGTCGCCCTCCTCCGGAAGCCCGAGATGCGGTGGGCCGGGAGGCAACACTCCTGGC
TCCCCAGAGAGGCGTGGGTCTGGGGCTGAGGGCCAGGGCTCGGATGCCCAGGTTCCGGGA
CTAGGGCCTCGGCCGTCAGCAAGGGTGGGGACCGGGGCACCCAGGGAAGGTCCCCCACAC
CCGCCAGTGCCAGCTCCCAGCTATGGAGCCCTTGAAGAACCTCTTCCTCAAGAGCCCCCT
GGGGTCATGGAACAGCAGTGGCAATGGGGGCAGCGGGGGCAGTGGCAGGCGGAGGTTGGC
CAGAGGGGTCCCCGAAGGCTGCAGCTTATGCCAACCCTGTGTGGACAGCCCTGTTTGACT
ACGAGCCCATGGGCAGGACGAGTTGGCCCTGCGGAAGGGCGACCGAGTGGAGGTGCTGTC
CCGGGATGCAGCTATCTCGGGTGACGAGGGCTGGTGGGCGGGCCAGGTAGGTGGCCAGGT
GGGCATCTTTCCGTCCAACTATGTGTCTCGGGGCGGTGGTCCCCCCCCCTGCGAGATGGC
CAGCTTCCAGGAGCTGCGGCTGGAGGAGGTGATTGGCATCGGTGGCTTCGGCAAGGTCTA
CCGTGGCAGCTGGCGGGGTGAGCTTGTGGCCGTGAAGGCAGCTCGCCAGGACCCCGATGA
GGACATCAGCGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGAGAGCTGAGCCAGGAAGAGGCAGCTCAACCTAGAGACACTCCAGCCACCCCCCTGCGC
AGAGACCCAACGGGAGTCCAGGCACTGCCCCTCGCTGGCCCCACCTTTCACTTGGCGGGT
GCTGGAGCTCGGCTCCCAGGACTGCTCTGGACTGAGGGACGCCCGGGCCCCTCTGTGCCG
GCCATGGTGAGACATCGGAGGCCCTGGGGGTCCACCCCCCCAGCCTGACCACACTGCTTC
CCTAGGTCGCCCTCCTCCGGAAGCCCGAGATGCGGTGGGCCGGGAGGCAACACTCCTGGC
TCCCCAGAGAGGCGTGGGTCTGGGGCTGAGGGCCAGGGCTCGGATGCCCAGGTTCCGGGA
CTAGGGCCTCGGCCGTCAGCAAGGGTGGGGACCGGGGCACCCAGGGAAGGTCCCCCACAC
CCGCCAGTGCCAGCTCCCAGCTATGGAGCCCTTGAAGAACCTCTTCCTCAAGAGCCCCCT
GGGGTCATGGAACAGCAGTGGCAATGGGGGCAGCGGGGGCAGTGGCAGGCGGAGGTTGGC
CAGAGGGGTCCCCGAAGGCTGCAGCTTATGCCAACCCTGTGTGGACAGCCCTGTTTGACT
ACGAGCCCATGGGCAGGACGAGTTGGCCCTGCGGAAGGGCGACCGAGTGGAGGTGCTGTC
CCGGGATGCAGCTATCTCGGGTGACGAGGGCTGGTGGGCGGGCCAGGTAGGTGGCCAGGT
GGGCATCTTTCCGTCCAACTATGTGTCTCGGGGCGGTGGTCCCCCCCCCTGCGAGATGGC
CAGCTTCCAGGAGCTGCGGCTGGAGGAGGTGATTGGCATCGGTGGCTTCGGCAAGGTCTA
CCGTGGCAGCTGGCGGGGTGAGCTTGTGGCCGTGAAGGCAGCTCGCCAGGACCCCGATGA
GGACATCAGCGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|62088890|dbj|BAD92892.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|62088890|dbj|BAD92892.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               231-509, - strand, RNAz p=0.986855
               

               
               550-785, + strand, RNAz p=0.8151

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               231-509, - strand, RNAz p=0.986855
               

               
               550-785, + strand, RNAz p=0.8151

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_002419, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_002419, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               2-912, gnl|bosTau2|chr29 (37838442-37839351)
               

               
               2-912, gnl|Hg17|chr11 (65138249-65137337)
               

               
               2-912, gnl|Mm7|chr19 (5584610-5585522)
               


               
               576-904, gnl|bosTau2|chr18 (41306650-41306997)
               

               
               576-904, gnl|Hg17|chr19 (45389833-45390180)
               

               
               576-904, gnl|Mm7|chr7 (24593273-24592926)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-912, gnl|bosTau2|chr29 (37838442-37839351)
               

               
               2-912, gnl|Hg17|chr11 (65138249-65137337)
               

               
               2-912, gnl|Mm7|chr19 (5584610-5585522)
               


               
               576-904, gnl|bosTau2|chr18 (41306650-41306997)
               

               
               576-904, gnl|Hg17|chr19 (45389833-45390180)
               

               
               576-904, gnl|Mm7|chr7 (24593273-24592926)

	231-509, - strand, RNAz p=0.986855
	550-785, + strand, RNAz p=0.8151

	2-912, gnl\|bosTau2\|chr29 (37838442-37839351)
	2-912, gnl\|Hg17\|chr11 (65138249-65137337)
	2-912, gnl\|Mm7\|chr19 (5584610-5585522)

	576-904, gnl\|bosTau2\|chr18 (41306650-41306997)
	576-904, gnl\|Hg17\|chr19 (45389833-45390180)
	576-904, gnl\|Mm7\|chr7 (24593273-24592926)