Ss1.1-Pig2-117F20.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCTAGCGACTGCTGTGACCTCATGCAGAAATGACGAAGTCGCTCAAGGCCGTCGTCGGG CTCAAAGGCATTTAACACGCTCGAGGTGGTGAGAGAGTGGGCGGCGGAACGGCCGGTGTC TCGCTTTTGCTCTCATCGCTATAATCCTTGGACGTGGCTGCACCGGTTTGTCAAGACAAC CGGACTCTGTGATGCGTCATCAGCCAGCGACCGGTGGGGGGGGCTCTAGAGACCGGCGAA GGAAGTAACGTAAAAAGGGAGCGCCTCCGGGGACGCGAGCCCGGCGTAAGTTGAGGCTAT GGCCCCTCGGCGCCTCCTGTTGGTTGGGGAGGGGAATTTCTCCTTCGCCGTTGCTCTGAA CCAGACCCTGGATCCCCGCACTAGTCTAACTGCCACCTGCCTCCAGCGCCCGGCCGACTT AGCCCAAGATCCGGTGGCCCAGGAGAATCTGCAGCGCCTGCGCGAGCGAGGTGCCGAGAT ACGTTTTGGTGTGGACTGCACACAGCTGGTGGATGCCTTTGAACTGCAAGATCGAGAGTT TGATCGAATTTATTTTAACTTTCCGCACTGTGGACGCAAAGCTGGAGTAGCTAAGAACAG GGAACTGCTTGCCAAGTTTTTCCAGAGCTGTGCAGATGTTCTTGCAGAGGAAGGAGAAGT CCATGTGGCATTGTGTAAAGGACAAGGTGGGACTCCTGCTGATAAGCCTATGAGAGAATG GCACAACAGTTGGCAAGTGGTTGCCATGGCAGCTCTGGGGGGATTCATTTTAAGTGATGT GCATCCTTTCAGCTGTGAGGCTGTGCCAGGATACAAGTGCACTGGATACAGGAGTCAAGA TAAATCCTTTCATGTAGAAGGCGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCTAGCGACTGCTGTGACCTCATGCAGAAATGACGAAGTCGCTCAAGGCCGTCGTCGGG CTCAAAGGCATTTAACACGCTCGAGGTGGTGAGAGAGTGGGCGGCGGAACGGCCGGTGTC TCGCTTTTGCTCTCATCGCTATAATCCTTGGACGTGGCTGCACCGGTTTGTCAAGACAAC CGGACTCTGTGATGCGTCATCAGCCAGCGACCGGTGGGGGGGGCTCTAGAGACCGGCGAA GGAAGTAACGTAAAAAGGGAGCGCCTCCGGGGACGCGAGCCCGGCGTAAGTTGAGGCTAT GGCCCCTCGGCGCCTCCTGTTGGTTGGGGAGGGGAATTTCTCCTTCGCCGTTGCTCTGAA CCAGACCCTGGATCCCCGCACTAGTCTAACTGCCACCTGCCTCCAGCGCCCGGCCGACTT AGCCCAAGATCCGGTGGCCCAGGAGAATCTGCAGCGCCTGCGCGAGCGAGGTGCCGAGAT ACGTTTTGGTGTGGACTGCACACAGCTGGTGGATGCCTTTGAACTGCAAGATCGAGAGTT TGATCGAATTTATTTTAACTTTCCGCACTGTGGACGCAAAGCTGGAGTAGCTAAGAACAG GGAACTGCTTGCCAAGTTTTTCCAGAGCTGTGCAGATGTTCTTGCAGAGGAAGGAGAAGT CCATGTGGCATTGTGTAAAGGACAAGGTGGGACTCCTGCTGATAAGCCTATGAGAGAATG GCACAACAGTTGGCAAGTGGTTGCCATGGCAGCTCTGGGGGGATTCATTTTAAGTGATGT GCATCCTTTCAGCTGTGAGGCTGTGCCAGGATACAAGTGCACTGGATACAGGAGTCAAGA TAAATCCTTTCATGTAGAAGGCGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 626-832, + strand, RNAz p=0.835121 | |
| 626-832, - strand, RNAz p=0.835121 | |
| 626-726, + strand, RNAz p=0.638417 | |
| 626-726, - strand, RNAz p=0.638417 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 626-832, + strand, RNAz p=0.835121 | |
| 626-832, - strand, RNAz p=0.835121 | |
| 626-726, + strand, RNAz p=0.638417 | |
| 626-726, - strand, RNAz p=0.638417 |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 2-477, gnl|bosTau2|chr15 (8367126-8367612) | |
| 2-477, gnl|Hg17|chr11 (111255369-111254888) | |
| 2-477, gnl|Mm7|chr9 (50746548-50747044) | |
| 626-832, gnl|bosTau2|chr15 (8369068-8369274) | |
| 626-832, gnl|canFam2|chr5 (24216735-24216524) | |
| 626-832, gnl|danRer3|chr5 (64258384-64258173) | |
| 626-832, gnl|echTel1|scaffold_321570 (42375-42586) | |
| 626-832, gnl|fr1|chrUn (212866636-212866426) | |
| 626-832, gnl|galGal2|chr24 (5887260-5887052) | |
| 626-832, gnl|hg17|chr11 (111252737-111252948) | |
| 626-832, gnl|Hg17|chr11 (111252947-111252741) | |
| 626-832, gnl|loxAfr1|scaffold_49541 (6100-5889) | |
| 626-832, gnl|mm7|chr9 (50748902-50748691) | |
| 626-832, gnl|Mm7|chr9 (50748690-50748896) | |
| 626-832, gnl|monDom2|scaffold_2 (130010307-130010096) | |
| 626-832, gnl|oryCun1|scaffold_211749 (218335-218546) | |
| 626-832, gnl|panTro1|chr9 (113245951-113246162) | |
| 626-832, gnl|rheMac2|chr14 (110345203-110345414) | |
| 626-832, gnl|rn3|chr8 (54146887-54146676) | |
| 626-832, gnl|tetNig1|chr7 (3652059-3651848) | |
| 626-832, gnl|xenTro1|scaffold_18 (3653408-3653626) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-477, gnl|bosTau2|chr15 (8367126-8367612) | |
| 2-477, gnl|Hg17|chr11 (111255369-111254888) | |
| 2-477, gnl|Mm7|chr9 (50746548-50747044) | |
| 626-832, gnl|bosTau2|chr15 (8369068-8369274) | |
| 626-832, gnl|canFam2|chr5 (24216735-24216524) | |
| 626-832, gnl|danRer3|chr5 (64258384-64258173) | |
| 626-832, gnl|echTel1|scaffold_321570 (42375-42586) | |
| 626-832, gnl|fr1|chrUn (212866636-212866426) | |
| 626-832, gnl|galGal2|chr24 (5887260-5887052) | |
| 626-832, gnl|hg17|chr11 (111252737-111252948) | |
| 626-832, gnl|Hg17|chr11 (111252947-111252741) | |
| 626-832, gnl|loxAfr1|scaffold_49541 (6100-5889) | |
| 626-832, gnl|mm7|chr9 (50748902-50748691) | |
| 626-832, gnl|Mm7|chr9 (50748690-50748896) | |
| 626-832, gnl|monDom2|scaffold_2 (130010307-130010096) | |
| 626-832, gnl|oryCun1|scaffold_211749 (218335-218546) | |
| 626-832, gnl|panTro1|chr9 (113245951-113246162) | |
| 626-832, gnl|rheMac2|chr14 (110345203-110345414) | |
| 626-832, gnl|rn3|chr8 (54146887-54146676) | |
| 626-832, gnl|tetNig1|chr7 (3652059-3651848) | |
| 626-832, gnl|xenTro1|scaffold_18 (3653408-3653626) |