Non-Coding RNA Search

Ss1.1-Pig2-119I09.5

Sequence:


               
               CACCGACCTACTGCAGGCCGTGCAGCGCAACGGGCGCATCCCAGGGGGGCAGGCGCGCGA
CCTCTTCGCGCAGATCGCCGGTGCTGTGCGCTACCTTGCACGACCACCACCTGGTGCACC
CGACCTCAAGTGCGAAAACGTGCTGCTGAGCCCTGATGAGCGCCGCGTCAAGCTTACCGA
CTTCGGCTTCGGCCGACAGGCGCACGGCTACCCGGATCTAAGCACCACATATTGCGGCTC
AGCCGCCTACGCATCGCCCGAGGTACTCCTGGGCATCCCCTACGACCCCAAGAAGTACGA
CGTGTGGAGCTTGGGCGTCGTGCTCTACGTCATGGTCACCGGGTGTATGCCCTTTGACGA
CTCCGATATCGCTGGCCTGCCCAGGCGCCAGAAGCGCGGCGTTCTCTACCCTGACGGCCT
CGAGCTGTCCGAACGCTGCAAGGCCCTGATCGCCGAGTTGCTGCAGTTCAGCCCGTCGGC
TAGGCCCTCCGCCGGCCAAGTAGCGCGCAACGGCTGGCTGCGTGCTGGGGACTCCGGCTA
GAAGCCGGGGTTCCCACTATTCCCGCTGCCCCGAGCACTGCGCAAGCGCAGCGTACGCGC
AAGAAGCGCGCTTCCGGAGTTCTGCGAAGCCGCCGCGCACCGCTGCGCACGCGCCCTTCC
CCTCATCCCAATTCTTTCGATGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACCGACCTACTGCAGGCCGTGCAGCGCAACGGGCGCATCCCAGGGGGGCAGGCGCGCGA
CCTCTTCGCGCAGATCGCCGGTGCTGTGCGCTACCTTGCACGACCACCACCTGGTGCACC
CGACCTCAAGTGCGAAAACGTGCTGCTGAGCCCTGATGAGCGCCGCGTCAAGCTTACCGA
CTTCGGCTTCGGCCGACAGGCGCACGGCTACCCGGATCTAAGCACCACATATTGCGGCTC
AGCCGCCTACGCATCGCCCGAGGTACTCCTGGGCATCCCCTACGACCCCAAGAAGTACGA
CGTGTGGAGCTTGGGCGTCGTGCTCTACGTCATGGTCACCGGGTGTATGCCCTTTGACGA
CTCCGATATCGCTGGCCTGCCCAGGCGCCAGAAGCGCGGCGTTCTCTACCCTGACGGCCT
CGAGCTGTCCGAACGCTGCAAGGCCCTGATCGCCGAGTTGCTGCAGTTCAGCCCGTCGGC
TAGGCCCTCCGCCGGCCAAGTAGCGCGCAACGGCTGGCTGCGTGCTGGGGACTCCGGCTA
GAAGCCGGGGTTCCCACTATTCCCGCTGCCCCGAGCACTGCGCAAGCGCAGCGTACGCGC
AAGAAGCGCGCTTCCGGAGTTCTGCGAAGCCGCCGCGCACCGCTGCGCACGCGCCCTTCC
CCTCATCCCAATTCTTTCGATGCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26345572|dbj|BAC36437.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26345572|dbj|BAC36437.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               439-635, - strand, RNAz p=0.82021

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               439-635, - strand, RNAz p=0.82021

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-669, gnl|bosTau2|chr7 (3954608-3955275)
               

               
               1-669, gnl|Hg17|chr19 (19486955-19486280)
               

               
               1-669, gnl|Mm7|chr8 (68357260-68357927)
               


               
               4-466, gnl|bosTau2|chr17 (44416704-44416230)
               

               
               4-466, gnl|Hg17|chr22 (17493754-17494228)
               

               
               4-466, gnl|Mm7|chr16 (17448755-17449229)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-669, gnl|bosTau2|chr7 (3954608-3955275)
               

               
               1-669, gnl|Hg17|chr19 (19486955-19486280)
               

               
               1-669, gnl|Mm7|chr8 (68357260-68357927)
               


               
               4-466, gnl|bosTau2|chr17 (44416704-44416230)
               

               
               4-466, gnl|Hg17|chr22 (17493754-17494228)
               

               
               4-466, gnl|Mm7|chr16 (17448755-17449229)

	1-669, gnl\|bosTau2\|chr7 (3954608-3955275)
	1-669, gnl\|Hg17\|chr19 (19486955-19486280)
	1-669, gnl\|Mm7\|chr8 (68357260-68357927)

	4-466, gnl\|bosTau2\|chr17 (44416704-44416230)
	4-466, gnl\|Hg17\|chr22 (17493754-17494228)
	4-466, gnl\|Mm7\|chr16 (17448755-17449229)