Non-Coding RNA Search

Ss1.1-Pig2-120D11.5

Sequence:


               
               CTCCTTCCACGCCCACAACCGCATGACCCCGCAGAACCTGGCAGTGTGCTTCGGTCCCGT
GCTGCTGCCGGCGCGCCAGACACCCACCAGGCCCCGCATACGCAGCTCTGGCCCAGGCCT
CTTCAACGCTGTGGACTTGAGAACACCCAACATCGAGGTGCTGCACTACCTGCTTCAGGC
CTGGCCAGATCCCCGCAGGCCCCCAGAGGCTCCGGAGTTAGTCCCGTACCTGCGGCCCAA
ACCACAGCCGCCGCTACACTTGCCGCTAGCGGGCCCGGATGTGGTGACTCGGCTTAACAA
CCGAAGCGGCCCCGAGAGCCCCCCGAGCAATCGCTACGCCGGTGACTGGAGCGTTTGCGG
GAGGGACTTCCTGCCCTGTGGGCGGGACTTCCTGCCCGGGCCAGACTACGACCACGTGAC
GGGCAGCGACAGCGAAGATGAGGAAGAAGAGGGTGGTGAGACGACAGGCGCCACCGACTT
CGAAGACGATTTCGAGGCGCCCTTCAACCCGCACCTGAACCTCAAAGACTTTGATGCCCT
CATCCTGGACCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCCTTCCACGCCCACAACCGCATGACCCCGCAGAACCTGGCAGTGTGCTTCGGTCCCGT
GCTGCTGCCGGCGCGCCAGACACCCACCAGGCCCCGCATACGCAGCTCTGGCCCAGGCCT
CTTCAACGCTGTGGACTTGAGAACACCCAACATCGAGGTGCTGCACTACCTGCTTCAGGC
CTGGCCAGATCCCCGCAGGCCCCCAGAGGCTCCGGAGTTAGTCCCGTACCTGCGGCCCAA
ACCACAGCCGCCGCTACACTTGCCGCTAGCGGGCCCGGATGTGGTGACTCGGCTTAACAA
CCGAAGCGGCCCCGAGAGCCCCCCGAGCAATCGCTACGCCGGTGACTGGAGCGTTTGCGG
GAGGGACTTCCTGCCCTGTGGGCGGGACTTCCTGCCCGGGCCAGACTACGACCACGTGAC
GGGCAGCGACAGCGAAGATGAGGAAGAAGAGGGTGGTGAGACGACAGGCGCCACCGACTT
CGAAGACGATTTCGAGGCGCCCTTCAACCCGCACCTGAACCTCAAAGACTTTGATGCCCT
CATCCTGGACCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|10435546|dbj|BAB14612.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|10435546|dbj|BAB14612.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               433-552, - strand, RNAz p=0.941596
               

               
               435-552, - strand, RNAz p=0.872416

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               433-552, - strand, RNAz p=0.941596
               

               
               435-552, - strand, RNAz p=0.872416

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               186-552, gnl|bosTau2|chr7 (7134798-7135164)
               

               
               186-552, gnl|canFam2|chr20 (50027109-50026873)
               

               
               186-552, gnl|danRer3|chr22 (5257317-5257111)
               

               
               186-552, gnl|echTel1|scaffold_228405 (5855-5619)
               

               
               186-552, gnl|hg17|chr19 (15085364-15085600)
               

               
               186-552, gnl|Hg17|chr19 (15085368-15085734)
               

               
               186-552, gnl|mm7|chr10 (78240524-78240282)
               

               
               186-552, gnl|Mm7|chr10 (78240518-78240146)
               

               
               186-552, gnl|monDom2|scaffold_100 (657396-657630)
               

               
               186-552, gnl|rheMac2|chr19 (14705562-14705798)
               

               
               186-552, gnl|rn3|chr7 (12591683-12591919)
               

               
               186-552, gnl|tetNig1|chrUn_random (82598827-82598591)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               186-552, gnl|bosTau2|chr7 (7134798-7135164)
               

               
               186-552, gnl|canFam2|chr20 (50027109-50026873)
               

               
               186-552, gnl|danRer3|chr22 (5257317-5257111)
               

               
               186-552, gnl|echTel1|scaffold_228405 (5855-5619)
               

               
               186-552, gnl|hg17|chr19 (15085364-15085600)
               

               
               186-552, gnl|Hg17|chr19 (15085368-15085734)
               

               
               186-552, gnl|mm7|chr10 (78240524-78240282)
               

               
               186-552, gnl|Mm7|chr10 (78240518-78240146)
               

               
               186-552, gnl|monDom2|scaffold_100 (657396-657630)
               

               
               186-552, gnl|rheMac2|chr19 (14705562-14705798)
               

               
               186-552, gnl|rn3|chr7 (12591683-12591919)
               

               
               186-552, gnl|tetNig1|chrUn_random (82598827-82598591)

	433-552, - strand, RNAz p=0.941596
	435-552, - strand, RNAz p=0.872416

	186-552, gnl\|bosTau2\|chr7 (7134798-7135164)
	186-552, gnl\|canFam2\|chr20 (50027109-50026873)
	186-552, gnl\|danRer3\|chr22 (5257317-5257111)
	186-552, gnl\|echTel1\|scaffold_228405 (5855-5619)
	186-552, gnl\|hg17\|chr19 (15085364-15085600)
	186-552, gnl\|Hg17\|chr19 (15085368-15085734)
	186-552, gnl\|mm7\|chr10 (78240524-78240282)
	186-552, gnl\|Mm7\|chr10 (78240518-78240146)
	186-552, gnl\|monDom2\|scaffold_100 (657396-657630)
	186-552, gnl\|rheMac2\|chr19 (14705562-14705798)
	186-552, gnl\|rn3\|chr7 (12591683-12591919)
	186-552, gnl\|tetNig1\|chrUn_random (82598827-82598591)