Non-Coding RNA Search

Ss1.1-Pig2-120K06.5

Sequence:


               
               ACGAGCGGGACTTCATGGGTGACAAGCGCGTGTACATCATGGATGTCTACAACCGCCACA
TCTACCCTGGGGACCGCTTTGCCAAGCAGGCCATCAGGCGCAAGGTGGAGCTGGAGTGGG
CCACAGAAGATGATGAGTACCTGACGAAGGTGGAGAGGAACCTGGAGAAGGCGCTTCAGG
AGCATCGGCCCGACGTGGTGGTGTACAACGCAGGCACCGATGTCTTGGAGGGAGACCGCC
TCGGGGGGCTATCCATCAGCCCGCAGGGCATCGTGAAGCGGGATGAGCTGGTGTTCCGGA
TGGTCCGAAGCCTCCAGGTGCCCATCCTCATGGTGACCTCGGGTGGGTACCAGAAGCGCA
CGGCCCGCATCATTGCTGACTCCATCCTTAACTTATATGGCCTGGGCCTCATCGGGCCCG
AGTCGGCCAGCGTCTCAGCACAGAACTCAGACTCGCCTCTGCTGCCCCCCGAGGTGCCCT
GACCACACTGCCCTCTGAGCGGCTCCCTGCCTGCCGCCCACCTGCCCACTGCCCCCATCA
GTGCTTCTTCTTTCCAACCGAGGGGTGGGGGCCTCACACAGCTCCACTCTCCCCACTGGG
TGTCAGGGGTCTCCAGGCCCCTCTGGGAGGGGGCAGACGGCAGGGCCCGAGTCCCAGCAG
GACCCCCACGGTCACGGCCAGGGCCAGATCAGGCCCCGTGGAGGTACAGTTCTCTCAGGA
GAACAGAGGGCAGGAGAGGCTCCCGGGCACAGGGAGGCCCCCAGGGTGGGGGGTTCTGGT
TTCTAAAACCAGACCAAAGAGGCTTCGGTCTCTAGCATGACAGGGGCTTCCTCCCCTCTC
CTCACCCCAGGTGTGGGGGGCCCAGGGCGGGGCTGGGGCCAGGCCTCCAGGGGTCCTGGG
TTGCCAGCCAGCAGGCAGGAGCCCTGGTCTTGGCTGCGAGGGGGTAGGAAAGGGGTGCTA
GTGGGTTTTCCCATCTGACCGTCTCTTTCAGCAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACGAGCGGGACTTCATGGGTGACAAGCGCGTGTACATCATGGATGTCTACAACCGCCACA
TCTACCCTGGGGACCGCTTTGCCAAGCAGGCCATCAGGCGCAAGGTGGAGCTGGAGTGGG
CCACAGAAGATGATGAGTACCTGACGAAGGTGGAGAGGAACCTGGAGAAGGCGCTTCAGG
AGCATCGGCCCGACGTGGTGGTGTACAACGCAGGCACCGATGTCTTGGAGGGAGACCGCC
TCGGGGGGCTATCCATCAGCCCGCAGGGCATCGTGAAGCGGGATGAGCTGGTGTTCCGGA
TGGTCCGAAGCCTCCAGGTGCCCATCCTCATGGTGACCTCGGGTGGGTACCAGAAGCGCA
CGGCCCGCATCATTGCTGACTCCATCCTTAACTTATATGGCCTGGGCCTCATCGGGCCCG
AGTCGGCCAGCGTCTCAGCACAGAACTCAGACTCGCCTCTGCTGCCCCCCGAGGTGCCCT
GACCACACTGCCCTCTGAGCGGCTCCCTGCCTGCCGCCCACCTGCCCACTGCCCCCATCA
GTGCTTCTTCTTTCCAACCGAGGGGTGGGGGCCTCACACAGCTCCACTCTCCCCACTGGG
TGTCAGGGGTCTCCAGGCCCCTCTGGGAGGGGGCAGACGGCAGGGCCCGAGTCCCAGCAG
GACCCCCACGGTCACGGCCAGGGCCAGATCAGGCCCCGTGGAGGTACAGTTCTCTCAGGA
GAACAGAGGGCAGGAGAGGCTCCCGGGCACAGGGAGGCCCCCAGGGTGGGGGGTTCTGGT
TTCTAAAACCAGACCAAAGAGGCTTCGGTCTCTAGCATGACAGGGGCTTCCTCCCCTCTC
CTCACCCCAGGTGTGGGGGGCCCAGGGCGGGGCTGGGGCCAGGCCTCCAGGGGTCCTGGG
TTGCCAGCCAGCAGGCAGGAGCCCTGGTCTTGGCTGCGAGGGGGTAGGAAAGGGGTGCTA
GTGGGTTTTCCCATCTGACCGTCTCTTTCAGCAAAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|11291393|pir||T46431

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|11291393|pir||T46431

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               612-729, - strand, RNAz p=0.998804

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               612-729, - strand, RNAz p=0.998804

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               264-996, gnl|bosTau2|chr22 (46153168-46152411)
               

               
               264-996, gnl|Hg17|chr3 (13520965-13521818)
               

               
               264-996, gnl|Mm7|chr6 (91255373-91256119)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               264-996, gnl|bosTau2|chr22 (46153168-46152411)
               

               
               264-996, gnl|Hg17|chr3 (13520965-13521818)
               

               
               264-996, gnl|Mm7|chr6 (91255373-91256119)

	264-996, gnl\|bosTau2\|chr22 (46153168-46152411)
	264-996, gnl\|Hg17\|chr3 (13520965-13521818)
	264-996, gnl\|Mm7\|chr6 (91255373-91256119)