Ss1.1-Pig2-120N09.5
|
GTTTCTGAACTTGCCCACCAATGGTTTCGAGGGCCAAGCCCCCAGGCCCTGCTGGTCCAG
GAGGAGAGACAGCTGCCGGCGAGCCTCCTGGTAGGGCCCAGCCTTGGCTGCCTCGTAGGT
CTTCAAGGCCAGGAGGTGGGGCCTCCCGAGAGCCCGGGCAGCCTGGCGGAAAGCCCAGAG
AAAGGCAGCCTTGCAGAGGCGGGAGGGAGGCCTGGGAGCAGCCTCAGCCTTCACACGCCC
AGTGGCCACGTCCACCACCTCGACATCAGGGTCCCCCAGGCTCCAGTTGAGGCTCAGGCC
GTGGCAGGTGTTGGAGTTGGGGTCAGAGGGAGCCACCGAGGGCCCCGTGAACAGGTGCAG
TGTGGTCCGGGTGTAGGGAGGAGGCAGACACGGTCCCAAGACCTTGTCTAGGCTGGGCCG
GCCGTGGATGGCCCTGCTCACAGACGGGGGGTCATGGCAGGGGTCGGCCAGGACCAGGCT
GGTGGCGTACACCGGGGGCAGGAAGTGGGCCAGCAGGGCGCCACCGAGCCCCAGCACAAC
CCAGCGGGCCAGCTTGTCACTGGC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
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GTTTCTGAACTTGCCCACCAATGGTTTCGAGGGCCAAGCCCCCAGGCCCTGCTGGTCCAG
GAGGAGAGACAGCTGCCGGCGAGCCTCCTGGTAGGGCCCAGCCTTGGCTGCCTCGTAGGT
CTTCAAGGCCAGGAGGTGGGGCCTCCCGAGAGCCCGGGCAGCCTGGCGGAAAGCCCAGAG
AAAGGCAGCCTTGCAGAGGCGGGAGGGAGGCCTGGGAGCAGCCTCAGCCTTCACACGCCC
AGTGGCCACGTCCACCACCTCGACATCAGGGTCCCCCAGGCTCCAGTTGAGGCTCAGGCC
GTGGCAGGTGTTGGAGTTGGGGTCAGAGGGAGCCACCGAGGGCCCCGTGAACAGGTGCAG
TGTGGTCCGGGTGTAGGGAGGAGGCAGACACGGTCCCAAGACCTTGTCTAGGCTGGGCCG
GCCGTGGATGGCCCTGCTCACAGACGGGGGGTCATGGCAGGGGTCGGCCAGGACCAGGCT
GGTGGCGTACACCGGGGGCAGGAAGTGGGCCAGCAGGGCGCCACCGAGCCCCAGCACAAC
CCAGCGGGCCAGCTTGTCACTGGC
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
111-217, - strand, RNAmicro p=0.901837 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
111-217, - strand, RNAmicro p=0.901837 |
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102-221, gnl|bosTau2|chr18 (10703636-10703755) |
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102-221, gnl|canFam2|chr5 (71164134-71163704) |
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102-221, gnl|dasNov1|scaffold_83708 (3799-3440) |
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102-221, gnl|echTel1|scaffold_197788 (7080-6673) |
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102-221, gnl|hg17|chr16 (82787731-82788174) |
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102-221, gnl|Hg17|chr16 (82787875-82787756) |
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102-221, gnl|loxAfr1|scaffold_274 (152334-152782) |
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102-221, gnl|mm7|chr8 (118249566-118249988) |
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102-221, gnl|Mm7|chr8 (118249706-118249587) |
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102-221, gnl|monDom2|scaffold_23 (16452930-16452467) |
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102-221, gnl|panTro1|chr18 (77677819-77678257) |
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102-221, gnl|rheMac2|chr20 (82329125-82329560) |
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102-221, gnl|rn3|chr19 (49877220-49877638) |
| |
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223-468, gnl|bosTau2|chr18 (10703988-10704233) |
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223-468, gnl|Hg17|chr16 (82787478-82787233) |
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223-468, gnl|Mm7|chr8 (118249262-118249017) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
102-221, gnl|bosTau2|chr18 (10703636-10703755) |
|
102-221, gnl|canFam2|chr5 (71164134-71163704) |
|
102-221, gnl|dasNov1|scaffold_83708 (3799-3440) |
|
102-221, gnl|echTel1|scaffold_197788 (7080-6673) |
|
102-221, gnl|hg17|chr16 (82787731-82788174) |
|
102-221, gnl|Hg17|chr16 (82787875-82787756) |
|
102-221, gnl|loxAfr1|scaffold_274 (152334-152782) |
|
102-221, gnl|mm7|chr8 (118249566-118249988) |
|
102-221, gnl|Mm7|chr8 (118249706-118249587) |
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102-221, gnl|monDom2|scaffold_23 (16452930-16452467) |
|
102-221, gnl|panTro1|chr18 (77677819-77678257) |
|
102-221, gnl|rheMac2|chr20 (82329125-82329560) |
|
102-221, gnl|rn3|chr19 (49877220-49877638) |
| |
|
223-468, gnl|bosTau2|chr18 (10703988-10704233) |
|
223-468, gnl|Hg17|chr16 (82787478-82787233) |
|
223-468, gnl|Mm7|chr8 (118249262-118249017) |
