Non-Coding RNA Search

Ss1.1-Pig2-121N19.5

Sequence:


               
               CCCGGACGCCGGTTGGTACCTGGGAGAGGAGGCGCTGGCTTGCCCCGGGAACGGGAGGGT
GGGGAGCGAGCACCTTGGAGCCTGCCCCTCGCTGGCGGTTGGGGATGAAGCGAAGCCCGC
GGGGTGAAGGGGTGGGAAGGTAGTGAGTCGGGTAAGGGGTGGAGGGCCGGGCGGCTGTTA
ACATCGATACTATGATGATAACGGAAATCCTTCTATTAGAATTTGAGAAGCTCCATTATT
TATTTTTAGGGTTTTTTTTTTAACCTTTATTTAGACTCTTCTCGCGTATATGATTAAGGA
AACAAATTGTACCATTTCCACCCATCGGCCTTTCTCACGCTATGGGGTTCCAATAGAGCT
TCTGTAGTAGGAGTGCTTTTTAAAGCACCCGCTCTCCAGACCTTGACTTTGAAGAAACTA
TCATATTTTAACAGGGTAATACTAGCAAGATATAATAATTATATGCTTTCAGGCAGGTGA
AGACCTCAGCTGCTATTCTGAAGGACATACTTTACTGACACCTGGTGCAGAAAAGAAAAT
ATTGAGTCAATTTCTAACAGAAGAGCAAAGAAGATTATGTTTCAAAAACTGATTTCCATT
CAGGGCAATATGGGGCAGATTCATATAAAGGCCTGTTCATTGACATAGTTCTGAATTTTT
CTCAAATTTAAAATCTGCCCTAATGGCCAGTTTGAGTTTTTTGCATATGGGAGTGTGTGT
TTAGTTGCAATGCCTTCGTAAAGGAGTATTATTAAAGATCCAGTGAAATATTTAGAAATG
TGATTAAACCATCTGAGAGGAGATACAGCACAGCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCGGACGCCGGTTGGTACCTGGGAGAGGAGGCGCTGGCTTGCCCCGGGAACGGGAGGGT
GGGGAGCGAGCACCTTGGAGCCTGCCCCTCGCTGGCGGTTGGGGATGAAGCGAAGCCCGC
GGGGTGAAGGGGTGGGAAGGTAGTGAGTCGGGTAAGGGGTGGAGGGCCGGGCGGCTGTTA
ACATCGATACTATGATGATAACGGAAATCCTTCTATTAGAATTTGAGAAGCTCCATTATT
TATTTTTAGGGTTTTTTTTTTAACCTTTATTTAGACTCTTCTCGCGTATATGATTAAGGA
AACAAATTGTACCATTTCCACCCATCGGCCTTTCTCACGCTATGGGGTTCCAATAGAGCT
TCTGTAGTAGGAGTGCTTTTTAAAGCACCCGCTCTCCAGACCTTGACTTTGAAGAAACTA
TCATATTTTAACAGGGTAATACTAGCAAGATATAATAATTATATGCTTTCAGGCAGGTGA
AGACCTCAGCTGCTATTCTGAAGGACATACTTTACTGACACCTGGTGCAGAAAAGAAAAT
ATTGAGTCAATTTCTAACAGAAGAGCAAAGAAGATTATGTTTCAAAAACTGATTTCCATT
CAGGGCAATATGGGGCAGATTCATATAAAGGCCTGTTCATTGACATAGTTCTGAATTTTT
CTCAAATTTAAAATCTGCCCTAATGGCCAGTTTGAGTTTTTTGCATATGGGAGTGTGTGT
TTAGTTGCAATGCCTTCGTAAAGGAGTATTATTAAAGATCCAGTGAAATATTTAGAAATG
TGATTAAACCATCTGAGAGGAGATACAGCACAGCTT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               425-544, + strand, RNAz p=0.514674
               

               
               595-707, - strand, RNAz p=0.711789

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               425-544, + strand, RNAz p=0.514674
               

               
               595-707, - strand, RNAz p=0.711789

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               1-803, gnl|bosTau2|chr4 (35265044-35265860)
               

               
               1-803, gnl|canFam2|chr14 (48871623-48872380)
               

               
               1-803, gnl|dasNov1|scaffold_8807 (6671-7370)
               

               
               1-803, gnl|echTel1|scaffold_315480 (35124-34395)
               

               
               1-803, gnl|hg17|chr7 (33718527-33719247)
               

               
               1-803, gnl|Hg17|chr7 (33718629-33719437)
               

               
               1-803, gnl|loxAfr1|scaffold_8753 (14294-15027)
               

               
               1-803, gnl|mm7|chr9 (23102734-23103454)
               

               
               1-803, gnl|Mm7|chr9 (23102838-23103592)
               

               
               1-803, gnl|monDom2|scaffold_5 (398289-399059)
               

               
               1-803, gnl|oryCun1|scaffold_198263 (3940-4604)
               

               
               1-803, gnl|panTro1|chr6 (34873248-34873974)
               

               
               1-803, gnl|rheMac2|chr3 (92232216-92231488)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-803, gnl|bosTau2|chr4 (35265044-35265860)
               

               
               1-803, gnl|canFam2|chr14 (48871623-48872380)
               

               
               1-803, gnl|dasNov1|scaffold_8807 (6671-7370)
               

               
               1-803, gnl|echTel1|scaffold_315480 (35124-34395)
               

               
               1-803, gnl|hg17|chr7 (33718527-33719247)
               

               
               1-803, gnl|Hg17|chr7 (33718629-33719437)
               

               
               1-803, gnl|loxAfr1|scaffold_8753 (14294-15027)
               

               
               1-803, gnl|mm7|chr9 (23102734-23103454)
               

               
               1-803, gnl|Mm7|chr9 (23102838-23103592)
               

               
               1-803, gnl|monDom2|scaffold_5 (398289-399059)
               

               
               1-803, gnl|oryCun1|scaffold_198263 (3940-4604)
               

               
               1-803, gnl|panTro1|chr6 (34873248-34873974)
               

               
               1-803, gnl|rheMac2|chr3 (92232216-92231488)

	425-544, + strand, RNAz p=0.514674
	595-707, - strand, RNAz p=0.711789

	1-803, gnl\|bosTau2\|chr4 (35265044-35265860)
	1-803, gnl\|canFam2\|chr14 (48871623-48872380)
	1-803, gnl\|dasNov1\|scaffold_8807 (6671-7370)
	1-803, gnl\|echTel1\|scaffold_315480 (35124-34395)
	1-803, gnl\|hg17\|chr7 (33718527-33719247)
	1-803, gnl\|Hg17\|chr7 (33718629-33719437)
	1-803, gnl\|loxAfr1\|scaffold_8753 (14294-15027)
	1-803, gnl\|mm7\|chr9 (23102734-23103454)
	1-803, gnl\|Mm7\|chr9 (23102838-23103592)
	1-803, gnl\|monDom2\|scaffold_5 (398289-399059)
	1-803, gnl\|oryCun1\|scaffold_198263 (3940-4604)
	1-803, gnl\|panTro1\|chr6 (34873248-34873974)
	1-803, gnl\|rheMac2\|chr3 (92232216-92231488)