Non-Coding RNA Search

Ss1.1-Pig2-122C18.5

Sequence:


               
               GGCATCTGCCTGGACCTTGCCATCCTGGGCAGTGCCTTCCTGCTGTCCCAGGTGGCCCCG
TCCCTGTTTATGGGCTCCATTGTTCAGCTCAGTGAGTCTGTCACTGCCTATATGGTGTCG
GCCGCAGGCCTGGGTCTGGTTGCCATTTACTTTGTCACGCAGGTAGTATTTGACAAGAGT
GACCTGGCCAAATAATCAGTGTAGGGTACCTCTAACCCGCTGAGAGAGGGCGGGCCTCCC
TGGGTCCCAGCTCCCGCTATCCCAGTCTCCTGTGAGCCCAGCCATTGGGCTGGGGGCTGG
CCTTCCCGTTTCTATTGCTGCCAAAGTGGCGTGGCTCTCTGCTGCCTCCCTGTGGCAGTG
AGGTGCATAGCTGCACAGATGGGGGACTGGGGCTCCTTCCCTCCCACTTCTCCCCAGTCT
TTAGGGCTGGTTGACTGGTAGTTCTCCAAAAAGCTTTAGTCTGGACTTCTACAAGGAGAG
CAGGGCAGGGCATTCCATTAGCTCCGTGCACTGTAATGCANGCCTCTGCTAGGGGATAAC
CCAGGCTCAGGGTTAACAGCTAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCATCTGCCTGGACCTTGCCATCCTGGGCAGTGCCTTCCTGCTGTCCCAGGTGGCCCCG
TCCCTGTTTATGGGCTCCATTGTTCAGCTCAGTGAGTCTGTCACTGCCTATATGGTGTCG
GCCGCAGGCCTGGGTCTGGTTGCCATTTACTTTGTCACGCAGGTAGTATTTGACAAGAGT
GACCTGGCCAAATAATCAGTGTAGGGTACCTCTAACCCGCTGAGAGAGGGCGGGCCTCCC
TGGGTCCCAGCTCCCGCTATCCCAGTCTCCTGTGAGCCCAGCCATTGGGCTGGGGGCTGG
CCTTCCCGTTTCTATTGCTGCCAAAGTGGCGTGGCTCTCTGCTGCCTCCCTGTGGCAGTG
AGGTGCATAGCTGCACAGATGGGGGACTGGGGCTCCTTCCCTCCCACTTCTCCCCAGTCT
TTAGGGCTGGTTGACTGGTAGTTCTCCAAAAAGCTTTAGTCTGGACTTCTACAAGGAGAG
CAGGGCAGGGCATTCCATTAGCTCCGTGCACTGTAATGCANGCCTCTGCTAGGGGATAAC
CCAGGCTCAGGGTTAACAGCTAGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|19353991|gb|AAH24519.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|19353991|gb|AAH24519.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-239, - strand, RNAz p=0.990802
               

               
               275-429, + strand, RNAz p=0.829154

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-239, - strand, RNAz p=0.990802
               

               
               275-429, + strand, RNAz p=0.829154

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC050416, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC050416, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-564, gnl|bosTau2|chr16 (2924525-2923986)
               

               
               1-564, gnl|Hg17|chr1 (202360222-202359684)
               

               
               1-564, gnl|Mm7|chr1 (131876990-131877482)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-564, gnl|bosTau2|chr16 (2924525-2923986)
               

               
               1-564, gnl|Hg17|chr1 (202360222-202359684)
               

               
               1-564, gnl|Mm7|chr1 (131876990-131877482)

	1-239, - strand, RNAz p=0.990802
	275-429, + strand, RNAz p=0.829154

	1-564, gnl\|bosTau2\|chr16 (2924525-2923986)
	1-564, gnl\|Hg17\|chr1 (202360222-202359684)
	1-564, gnl\|Mm7\|chr1 (131876990-131877482)