Non-Coding RNA Search

Ss1.1-Pig2-122E12.5

Sequence:


               
               CACCAATCTGCTGCCTCGGCTGCGCTACTTGCTAGAGGTGACCTGCCCGGGACCTTCTGT
GGTCCTTGACATCCTAGCTGTGCTCATCCGCCTGGCCCGGCATTCCTTGGAGTCAGCTAC
AAGGGTCCTAGAGTGCCCTCGGCTGATAGAGACTGTGGTTCGAGAGTTCCTGCCCACCAG
CTGGTCCCGCATGGAGGTGGGACCTACCCCCAGTCTACACAGAGTGCCCTGTGCTCCTGC
CATGAAACTGCTTCGTGTCCTGGCCTCGGCTGGTAGGAACATTGCTGCCCGGCTGTTGAG
CGGTTTTGATCTCCGGAGTCGCCTGTACCGCTTTATAGCTGAGGCTCCCCAGGAACTGGC
TTTGCCCCCAGAGGAAGCGGAGACGCTGAGCACCGAGGCCTTCCGTCTGTGGGCTGTGGC
CGCCTGCTATGGCCAGGGCGGTGACCTATACAGGGAACTATACCCTGTGCTGATGCAAAC
CCTTCAGGCTGTGCCAAAGGAACTCAGCAGCCACGTGCCTCGGCCTCTGGCCCTGCAGAG
GATAGCCTCACTGCTCACTCTCCTCACCCAGCTGACCCTGGCAGCCAGCAGCACCACCCC
TGAACCCAGCAGTGACTCTGCTGAGGCCAGCCTGTCGGCCACCCCTTCCTCCATCACTTG
GACACAGGTGTCTGGGCTCCAGCCTCTTGTGGAGCCATGTCTAAGAGAGACCTTGAAGTT
GCTGCCCAGACCTGAGATGTGGAGTGCGCTGGGCCCAGTGCCCCCTGCCTGCCTGCTCTT
CATGGATGCCTACTACCAGGCCTGGAGCCAACAGCCAGGCTTGTGCCCGGGGGACTGGCT
TCAGGACATGGAGCGCCTGTCAGAGGAGCTGCTGCTGCCCCTGCTGAGCCAGCCTGCTCT
GGGCAGCCTGTGGGATTCCCTGAGGTGCTGCTCCCCTCTCTGCAACCCTCAGTCCTGTGC
TCCAGCCCCTGAAGCACTCCCCAGCCTCGTGTCACTGGGCTGCACAGGAGGTCCCCCCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACCAATCTGCTGCCTCGGCTGCGCTACTTGCTAGAGGTGACCTGCCCGGGACCTTCTGT
GGTCCTTGACATCCTAGCTGTGCTCATCCGCCTGGCCCGGCATTCCTTGGAGTCAGCTAC
AAGGGTCCTAGAGTGCCCTCGGCTGATAGAGACTGTGGTTCGAGAGTTCCTGCCCACCAG
CTGGTCCCGCATGGAGGTGGGACCTACCCCCAGTCTACACAGAGTGCCCTGTGCTCCTGC
CATGAAACTGCTTCGTGTCCTGGCCTCGGCTGGTAGGAACATTGCTGCCCGGCTGTTGAG
CGGTTTTGATCTCCGGAGTCGCCTGTACCGCTTTATAGCTGAGGCTCCCCAGGAACTGGC
TTTGCCCCCAGAGGAAGCGGAGACGCTGAGCACCGAGGCCTTCCGTCTGTGGGCTGTGGC
CGCCTGCTATGGCCAGGGCGGTGACCTATACAGGGAACTATACCCTGTGCTGATGCAAAC
CCTTCAGGCTGTGCCAAAGGAACTCAGCAGCCACGTGCCTCGGCCTCTGGCCCTGCAGAG
GATAGCCTCACTGCTCACTCTCCTCACCCAGCTGACCCTGGCAGCCAGCAGCACCACCCC
TGAACCCAGCAGTGACTCTGCTGAGGCCAGCCTGTCGGCCACCCCTTCCTCCATCACTTG
GACACAGGTGTCTGGGCTCCAGCCTCTTGTGGAGCCATGTCTAAGAGAGACCTTGAAGTT
GCTGCCCAGACCTGAGATGTGGAGTGCGCTGGGCCCAGTGCCCCCTGCCTGCCTGCTCTT
CATGGATGCCTACTACCAGGCCTGGAGCCAACAGCCAGGCTTGTGCCCGGGGGACTGGCT
TCAGGACATGGAGCGCCTGTCAGAGGAGCTGCTGCTGCCCCTGCTGAGCCAGCCTGCTCT
GGGCAGCCTGTGGGATTCCCTGAGGTGCTGCTCCCCTCTCTGCAACCCTCAGTCCTGTGC
TCCAGCCCCTGAAGCACTCCCCAGCCTCGTGTCACTGGGCTGCACAGGAGGTCCCCCCCA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               164-283, - strand, RNAz p=0.631391
               

               
               606-725, + strand, RNAz p=0.736057

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               164-283, - strand, RNAz p=0.631391
               

               
               606-725, + strand, RNAz p=0.736057

Aligned organism(s): 21 entry(ies)

More info

Aligned organism(s): 21 entry(ies)

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               124-301, gnl|bosTau2|chr10 (23033231-23033054)
               

               
               124-301, gnl|canFam2|chr30 (11554191-11554395)
               

               
               124-301, gnl|danRer3|chr14 (42271658-42271855)
               

               
               124-301, gnl|echTel1|scaffold_312053 (41297-41508)
               

               
               124-301, gnl|fr1|chrUn (134295384-134295580)
               

               
               124-301, gnl|galGal2|chrUn (17036875-17037102)
               

               
               124-301, gnl|hg17|chr15 (39606382-39606589)
               

               
               124-301, gnl|Hg17|chr15 (39606559-39606382)
               

               
               124-301, gnl|loxAfr1|scaffold_168499 (497-703)
               

               
               124-301, gnl|mm7|chr2 (119513331-119513537)
               

               
               124-301, gnl|Mm7|chr2 (119513508-119513331)
               

               
               124-301, gnl|monDom2|scaffold_12 (595439-595245)
               

               
               124-301, gnl|oryCun1|scaffold_199507 (9124-9330)
               

               
               124-301, gnl|panTro1|chr16 (39577809-39578016)
               

               
               124-301, gnl|rheMac2|chr7 (19916025-19916232)
               

               
               124-301, gnl|rn3|chr3 (106182173-106182377)
               

               
               124-301, gnl|tetNig1|chr10 (5845531-5845706)
               

               
               124-301, gnl|xenTro1|scaffold_33 (3019395-3019181)
               


               
               606-814, gnl|bosTau2|chr10 (23031709-23031501)
               

               
               606-814, gnl|Hg17|chr15 (39603469-39603261)
               

               
               606-814, gnl|Mm7|chr2 (119511947-119511739)

Aligned organism(s): 21 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               124-301, gnl|bosTau2|chr10 (23033231-23033054)
               

               
               124-301, gnl|canFam2|chr30 (11554191-11554395)
               

               
               124-301, gnl|danRer3|chr14 (42271658-42271855)
               

               
               124-301, gnl|echTel1|scaffold_312053 (41297-41508)
               

               
               124-301, gnl|fr1|chrUn (134295384-134295580)
               

               
               124-301, gnl|galGal2|chrUn (17036875-17037102)
               

               
               124-301, gnl|hg17|chr15 (39606382-39606589)
               

               
               124-301, gnl|Hg17|chr15 (39606559-39606382)
               

               
               124-301, gnl|loxAfr1|scaffold_168499 (497-703)
               

               
               124-301, gnl|mm7|chr2 (119513331-119513537)
               

               
               124-301, gnl|Mm7|chr2 (119513508-119513331)
               

               
               124-301, gnl|monDom2|scaffold_12 (595439-595245)
               

               
               124-301, gnl|oryCun1|scaffold_199507 (9124-9330)
               

               
               124-301, gnl|panTro1|chr16 (39577809-39578016)
               

               
               124-301, gnl|rheMac2|chr7 (19916025-19916232)
               

               
               124-301, gnl|rn3|chr3 (106182173-106182377)
               

               
               124-301, gnl|tetNig1|chr10 (5845531-5845706)
               

               
               124-301, gnl|xenTro1|scaffold_33 (3019395-3019181)
               


               
               606-814, gnl|bosTau2|chr10 (23031709-23031501)
               

               
               606-814, gnl|Hg17|chr15 (39603469-39603261)
               

               
               606-814, gnl|Mm7|chr2 (119511947-119511739)

	164-283, - strand, RNAz p=0.631391
	606-725, + strand, RNAz p=0.736057

	124-301, gnl\|bosTau2\|chr10 (23033231-23033054)
	124-301, gnl\|canFam2\|chr30 (11554191-11554395)
	124-301, gnl\|danRer3\|chr14 (42271658-42271855)
	124-301, gnl\|echTel1\|scaffold_312053 (41297-41508)
	124-301, gnl\|fr1\|chrUn (134295384-134295580)
	124-301, gnl\|galGal2\|chrUn (17036875-17037102)
	124-301, gnl\|hg17\|chr15 (39606382-39606589)
	124-301, gnl\|Hg17\|chr15 (39606559-39606382)
	124-301, gnl\|loxAfr1\|scaffold_168499 (497-703)
	124-301, gnl\|mm7\|chr2 (119513331-119513537)
	124-301, gnl\|Mm7\|chr2 (119513508-119513331)
	124-301, gnl\|monDom2\|scaffold_12 (595439-595245)
	124-301, gnl\|oryCun1\|scaffold_199507 (9124-9330)
	124-301, gnl\|panTro1\|chr16 (39577809-39578016)
	124-301, gnl\|rheMac2\|chr7 (19916025-19916232)
	124-301, gnl\|rn3\|chr3 (106182173-106182377)
	124-301, gnl\|tetNig1\|chr10 (5845531-5845706)
	124-301, gnl\|xenTro1\|scaffold_33 (3019395-3019181)

	606-814, gnl\|bosTau2\|chr10 (23031709-23031501)
	606-814, gnl\|Hg17\|chr15 (39603469-39603261)
	606-814, gnl\|Mm7\|chr2 (119511947-119511739)