Ss1.1-Pig2-122F16.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGCATGATGGCAGAAGGAATTGAAACATTAATTCATTGGTATGAAAATGAGCGCTCTTT TCCCAGAGCTAATAGCTTAGATGCGATTAGCTAAAGCCTGCATTGTAGCTAGTGCAGGGC TCAGCTCTTGGCAGACTATGTGAATCAGCAAAAGTGCCCCTTTAGGGGAGACCAGAAGTA AAGGCACATGTTCCTTTGGGCTGTCATAAATCCCCATCCCACACCCCCAGCCTGGCTGTC ATGGGCTTTATGAACATGCTCAACCATCCTCAGCTACCCTGAGCTGGTGGGTGGTAAACC CTGATGCTTTTCCAGCAACACTGCTGATTTCTACCTGGTTCTCTCTCCCTCTTTCTCACC CCCAGGCCTCTGGGCCCTGGTGAACAATGCTGGTGTGGGCCTGCCCAGTGGCCCCAATGA ATGGCTGACCAAGGAAGACTTTGTGAAGGTGATCAATGTGAACCTGGTGGGACTGATTGA AGTGACCCTCCATATGCTGCCCATGGTCAAGAAAGCCCGGGGCAGGGTTGTCAACATGTC CAGCAGTGGTGGCCGTGTAGCTGTCATTGGTGGTGGCTACTGTGTCTCCAAGTTTGGTGT CGAGGCCTTCTCTGACAGCATCAGGCGTGAGCTCCACTATTTCGGGGTGAAAGTCAGCAT CATTGAGCCGGGCAACTACCGGACATCCATTCTGGGCAAGGAGAGCTTGGAGATGCGCAT GCGCAAGATGTGGGCGCGGCTGCCTCAGGAGACCCGCGATAGCTATGGAGAAGAGTACTT CCATATCTATACTGACAAGTTAAAGAACATGATGCAGTTGGCAGAGCCAAGGATCCGTGA TGTCACCAATAGCATGGAACATGCCATTGTTTCCCGGAGCCCTCGCATCCGCTACAACCC TGGCCTGGATGCCAAACTCCTCTACATTCCCTTGGCTAAATTGCCCACCCCTGTGACAGA TTTCATCCTGAGCCGGTACCTTCCAAGGCCAGCAGACAGTGTCTGAACTGGGGAAGCCCA AGGGGTGGTCAGTGGAGTGTAGAGGAGGGGAGTTAGAGAAGGCATCATGGGGTCACAAGA GGGGAGATCAGATGTTCTGGGGGCACCTTGCTTGGTTGACACCCTTCCAGCACTAGTGAA TTTATGAGTAACTCCTAATAGGAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGCATGATGGCAGAAGGAATTGAAACATTAATTCATTGGTATGAAAATGAGCGCTCTTT TCCCAGAGCTAATAGCTTAGATGCGATTAGCTAAAGCCTGCATTGTAGCTAGTGCAGGGC TCAGCTCTTGGCAGACTATGTGAATCAGCAAAAGTGCCCCTTTAGGGGAGACCAGAAGTA AAGGCACATGTTCCTTTGGGCTGTCATAAATCCCCATCCCACACCCCCAGCCTGGCTGTC ATGGGCTTTATGAACATGCTCAACCATCCTCAGCTACCCTGAGCTGGTGGGTGGTAAACC CTGATGCTTTTCCAGCAACACTGCTGATTTCTACCTGGTTCTCTCTCCCTCTTTCTCACC CCCAGGCCTCTGGGCCCTGGTGAACAATGCTGGTGTGGGCCTGCCCAGTGGCCCCAATGA ATGGCTGACCAAGGAAGACTTTGTGAAGGTGATCAATGTGAACCTGGTGGGACTGATTGA AGTGACCCTCCATATGCTGCCCATGGTCAAGAAAGCCCGGGGCAGGGTTGTCAACATGTC CAGCAGTGGTGGCCGTGTAGCTGTCATTGGTGGTGGCTACTGTGTCTCCAAGTTTGGTGT CGAGGCCTTCTCTGACAGCATCAGGCGTGAGCTCCACTATTTCGGGGTGAAAGTCAGCAT CATTGAGCCGGGCAACTACCGGACATCCATTCTGGGCAAGGAGAGCTTGGAGATGCGCAT GCGCAAGATGTGGGCGCGGCTGCCTCAGGAGACCCGCGATAGCTATGGAGAAGAGTACTT CCATATCTATACTGACAAGTTAAAGAACATGATGCAGTTGGCAGAGCCAAGGATCCGTGA TGTCACCAATAGCATGGAACATGCCATTGTTTCCCGGAGCCCTCGCATCCGCTACAACCC TGGCCTGGATGCCAAACTCCTCTACATTCCCTTGGCTAAATTGCCCACCCCTGTGACAGA TTTCATCCTGAGCCGGTACCTTCCAAGGCCAGCAGACAGTGTCTGAACTGGGGAAGCCCA AGGGGTGGTCAGTGGAGTGTAGAGGAGGGGAGTTAGAGAAGGCATCATGGGGTCACAAGA GGGGAGATCAGATGTTCTGGGGGCACCTTGCTTGGTTGACACCCTTCCAGCACTAGTGAA TTTATGAGTAACTCCTAATAGGAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 261-378, - strand, RNAz p=0.867852 | |
| 261-379, - strand, RNAz p=0.994246 | |
| 419-538, + strand, RNAz p=0.894409 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 261-378, - strand, RNAz p=0.867852 | |
| 261-379, - strand, RNAz p=0.994246 | |
| 419-538, + strand, RNAz p=0.894409 |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 2-166, gnl|bosTau2|chr5 (32798503-32798664) | |
| 2-166, gnl|canFam2|chr10 (4100210-4100509) | |
| 2-166, gnl|hg17|chr12 (55610704-55611006) | |
| 2-166, gnl|Hg17|chr12 (55610870-55610703) | |
| 2-166, gnl|mm7|chr10 (127403341-127403082) | |
| 2-166, gnl|Mm7|chr10 (127403207-127403350) | |
| 2-166, gnl|panTro1|chr10 (56895979-56896281) | |
| 2-166, gnl|rheMac2|chr11 (53962676-53962982) | |
| 2-166, gnl|rn3|chr7 (67875287-67875016) | |
| 261-625, gnl|bosTau2|chr5 (32798993-32799357) | |
| 261-625, gnl|canFam2|chr10 (4099735-4100006) | |
| 261-625, gnl|danRer3|chrUn (129356834-129356573) | |
| 261-625, gnl|dasNov1|scaffold_80255 (6634-6898) | |
| 261-625, gnl|echTel1|scaffold_194817 (2175-2437) | |
| 261-625, gnl|fr1|chrUn (121748660-121748923) | |
| 261-625, gnl|hg17|chr12 (55610266-55610537) | |
| 261-625, gnl|Hg17|chr12 (55610629-55610276) | |
| 261-625, gnl|loxAfr1|scaffold_1651 (75904-75633) | |
| 261-625, gnl|mm7|chr10 (127403815-127403544) | |
| 261-625, gnl|Mm7|chr10 (127403456-127403803) | |
| 261-625, gnl|monDom2|scaffold_303 (19431-19702) | |
| 261-625, gnl|oryCun1|scaffold_151581 (520-791) | |
| 261-625, gnl|panTro1|chr10 (56895541-56895812) | |
| 261-625, gnl|rheMac2|chr11 (53962235-53962506) | |
| 261-625, gnl|rn3|chr7 (67875756-67875485) | |
| 261-625, gnl|tetNig1|chrUn_random (104655459-104655730) | |
| 261-625, gnl|xenTro1|scaffold_887 (114545-114813) | |
| 789-1164, gnl|bosTau2|chr5 (32803385-32803761) | |
| 789-1164, gnl|Hg17|chr12 (55604101-55603718) | |
| 789-1164, gnl|Mm7|chr10 (127411133-127411479) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-166, gnl|bosTau2|chr5 (32798503-32798664) | |
| 2-166, gnl|canFam2|chr10 (4100210-4100509) | |
| 2-166, gnl|hg17|chr12 (55610704-55611006) | |
| 2-166, gnl|Hg17|chr12 (55610870-55610703) | |
| 2-166, gnl|mm7|chr10 (127403341-127403082) | |
| 2-166, gnl|Mm7|chr10 (127403207-127403350) | |
| 2-166, gnl|panTro1|chr10 (56895979-56896281) | |
| 2-166, gnl|rheMac2|chr11 (53962676-53962982) | |
| 2-166, gnl|rn3|chr7 (67875287-67875016) | |
| 261-625, gnl|bosTau2|chr5 (32798993-32799357) | |
| 261-625, gnl|canFam2|chr10 (4099735-4100006) | |
| 261-625, gnl|danRer3|chrUn (129356834-129356573) | |
| 261-625, gnl|dasNov1|scaffold_80255 (6634-6898) | |
| 261-625, gnl|echTel1|scaffold_194817 (2175-2437) | |
| 261-625, gnl|fr1|chrUn (121748660-121748923) | |
| 261-625, gnl|hg17|chr12 (55610266-55610537) | |
| 261-625, gnl|Hg17|chr12 (55610629-55610276) | |
| 261-625, gnl|loxAfr1|scaffold_1651 (75904-75633) | |
| 261-625, gnl|mm7|chr10 (127403815-127403544) | |
| 261-625, gnl|Mm7|chr10 (127403456-127403803) | |
| 261-625, gnl|monDom2|scaffold_303 (19431-19702) | |
| 261-625, gnl|oryCun1|scaffold_151581 (520-791) | |
| 261-625, gnl|panTro1|chr10 (56895541-56895812) | |
| 261-625, gnl|rheMac2|chr11 (53962235-53962506) | |
| 261-625, gnl|rn3|chr7 (67875756-67875485) | |
| 261-625, gnl|tetNig1|chrUn_random (104655459-104655730) | |
| 261-625, gnl|xenTro1|scaffold_887 (114545-114813) | |
| 789-1164, gnl|bosTau2|chr5 (32803385-32803761) | |
| 789-1164, gnl|Hg17|chr12 (55604101-55603718) | |
| 789-1164, gnl|Mm7|chr10 (127411133-127411479) |