Non-Coding RNA Search

Ss1.1-Pig2-122K09.5

Sequence:


               
               TTTGGCTACACATAGGCACCTGGAGAGCTTTTAAAAACCACTGAAGCGCTTGCTGCCCTC
AAGTATGCTGCCCAGTTGGCTCATACTCTGGGAGTAGTTCCCAAGGATTGGTATGTTTTA
ACAACTCCCTCTGCAGTTCCCACTTGCACCCAGAGTGGAGAACCACGGTTCTCTAGCCTA
TACGTTCTTCCCCTCTTCATTTTTCTTTCTTTCTCGGCTGTGTGCCCTCCTTTACTAATG
TGTATGAAGGATAGCTTGCCTGTACCTGCCCTCCCCCTGCTCTGAGACAGTTTCTGTAGA
AGCTACAGAGTGACCAGTTGCTTGGAATTGCTGTATTGTTTTGTTTTGTTTCCTGTTTTT
GTCCTGGAGGGCGAGGCCCTTCTAAGCCCAGTCTCCAGCAGTTTCACAAGCCACTCCACT
GCTGCTGTGTTAGATGGTCATCCTGGTTATTGAAACACTTTAAAGCTTGATGATCTGCAG
GTTATGCCCTTGTCTCACGATTTATGTGTCTTTGGATAGTTCCTACTTACACTGTAAATG
GGCCACAATGGAGGAGCTCGAAAAGGATCCTCGCATCGCACAGAAGATCAAGCGATTTAG
GAATAAACAAGCCCAGATGAAGCACATTTTTACTGAGGTGAAGCAATATTTACTAATTGC
TGCTTTTCTTGCAGTATTAAATGCTTGGTTTAAGTTTCTTCAAGTTGAAGTCCCATGTAG
CTCTGTCATCAAGTCAGGTTGCTGAGTGTGCACTGGTTTGTGACTAAACTTGTCCAGATT
TAAGCCAAAGAAAACAAATTTCCACTAAGGAATAAGGATCAACCTTATAAACTGACAGCT
CTAAGAATGTGCATTTTGGTCAGAGTACCTGTAAATAGCCAGGGCAAAAGGAATGTGCAC
ATCGTTCTTTCATTTCTTCCTCCCACCCTCTCTTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGGCTACACATAGGCACCTGGAGAGCTTTTAAAAACCACTGAAGCGCTTGCTGCCCTC
AAGTATGCTGCCCAGTTGGCTCATACTCTGGGAGTAGTTCCCAAGGATTGGTATGTTTTA
ACAACTCCCTCTGCAGTTCCCACTTGCACCCAGAGTGGAGAACCACGGTTCTCTAGCCTA
TACGTTCTTCCCCTCTTCATTTTTCTTTCTTTCTCGGCTGTGTGCCCTCCTTTACTAATG
TGTATGAAGGATAGCTTGCCTGTACCTGCCCTCCCCCTGCTCTGAGACAGTTTCTGTAGA
AGCTACAGAGTGACCAGTTGCTTGGAATTGCTGTATTGTTTTGTTTTGTTTCCTGTTTTT
GTCCTGGAGGGCGAGGCCCTTCTAAGCCCAGTCTCCAGCAGTTTCACAAGCCACTCCACT
GCTGCTGTGTTAGATGGTCATCCTGGTTATTGAAACACTTTAAAGCTTGATGATCTGCAG
GTTATGCCCTTGTCTCACGATTTATGTGTCTTTGGATAGTTCCTACTTACACTGTAAATG
GGCCACAATGGAGGAGCTCGAAAAGGATCCTCGCATCGCACAGAAGATCAAGCGATTTAG
GAATAAACAAGCCCAGATGAAGCACATTTTTACTGAGGTGAAGCAATATTTACTAATTGC
TGCTTTTCTTGCAGTATTAAATGCTTGGTTTAAGTTTCTTCAAGTTGAAGTCCCATGTAG
CTCTGTCATCAAGTCAGGTTGCTGAGTGTGCACTGGTTTGTGACTAAACTTGTCCAGATT
TAAGCCAAAGAAAACAAATTTCCACTAAGGAATAAGGATCAACCTTATAAACTGACAGCT
CTAAGAATGTGCATTTTGGTCAGAGTACCTGTAAATAGCCAGGGCAAAAGGAATGTGCAC
ATCGTTCTTTCATTTCTTCCTCCCACCCTCTCTTAC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               291-408, + strand, RNAz p=0.538027

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               291-408, + strand, RNAz p=0.538027

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of BC039860, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC039860, +

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               14-924, gnl|bosTau2|chr13 (51697772-51696906)
               

               
               14-924, gnl|Hg17|chr20 (39560046-39559133)
               

               
               14-924, gnl|Mm7|chr2 (160770626-160769857)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               14-924, gnl|bosTau2|chr13 (51697772-51696906)
               

               
               14-924, gnl|Hg17|chr20 (39560046-39559133)
               

               
               14-924, gnl|Mm7|chr2 (160770626-160769857)

	14-924, gnl\|bosTau2\|chr13 (51697772-51696906)
	14-924, gnl\|Hg17\|chr20 (39560046-39559133)
	14-924, gnl\|Mm7\|chr2 (160770626-160769857)