Non-Coding RNA Search

Ss1.1-Pig2-122M15.5

Sequence:


               
               ATAAAATTCTGCTTTTCTATTCTGAAAAAGGACTTATCTAGGACTATGGCAAATAATCTC
TAACGATTTACCTAGAAGTTAAGGAATTGAGGGTATTCTGTTCTGGCAACAGAAAATTTA
CCCTTCTGATGAAATCCAAGCTATTCAGCGTTCTGCAGAAGCCTCTCCCCCTCACAGATC
TCTGCGGCTGCTGATTGGTAAAGGAAGCTTGAGGAGGGAACTGCAGCCCTAGGAAACTGG
GTGAATGGGGTTCCAAGGGCCCCTGGGCTGGGATGAGCTGGCTATGAATGTACATGAAGA
CATAATAGCTCAACATCTAGGATTTTGCATGCAGAGCAGATCCTGCCTTGTCACTGACTT
CATCTGGGATTGTTTTATCCATTCACTGGGGCTTAGAGAACAAAGAGCCCAGTTCACAGG
CACAGACTTGAGGGTGCTCAGCAACAGCCCAGATTTAGGGGACATTTGAGGGACTCTTGG
GGGCTGCAGCCAAAAACTGTCTCTCTCCTGGCTATACCCGCTTAACTTCAGTTCCTTTTC
CTGTCAATACGTCCCTGCCCGCCGCCTCTCGGTGTTACCTCCATAATGTCTTGTGTGTGT
TATGTGTGTCGACCTGTGTAGTAGTGTGTGAGCCCTGAGGGGCAGGGCTTGTGGCTCTGG
TGTTAGGTTCAGGGGGCTTCAGACCCTTCTGTGAGCCCCAGGCTCTCATGGCGCTGTCCC
CTTTCCTCTCCTCTTTTCCTCCACAACCAGGGCATGGAGCATGTGGCTGTCCTGAGGTTC
CTAACTGATGCGCCTCCCTCCCACCTCCTCAAGTGGTGACTTTGTGTGCCCTTCCTCCTC
CTCTGTGTATTCCTTCTCGATGCTTTCCTTGGTGTTAACCTGAATAAAGAGGCGTCATCT
CCCCTCGGAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATAAAATTCTGCTTTTCTATTCTGAAAAAGGACTTATCTAGGACTATGGCAAATAATCTC
TAACGATTTACCTAGAAGTTAAGGAATTGAGGGTATTCTGTTCTGGCAACAGAAAATTTA
CCCTTCTGATGAAATCCAAGCTATTCAGCGTTCTGCAGAAGCCTCTCCCCCTCACAGATC
TCTGCGGCTGCTGATTGGTAAAGGAAGCTTGAGGAGGGAACTGCAGCCCTAGGAAACTGG
GTGAATGGGGTTCCAAGGGCCCCTGGGCTGGGATGAGCTGGCTATGAATGTACATGAAGA
CATAATAGCTCAACATCTAGGATTTTGCATGCAGAGCAGATCCTGCCTTGTCACTGACTT
CATCTGGGATTGTTTTATCCATTCACTGGGGCTTAGAGAACAAAGAGCCCAGTTCACAGG
CACAGACTTGAGGGTGCTCAGCAACAGCCCAGATTTAGGGGACATTTGAGGGACTCTTGG
GGGCTGCAGCCAAAAACTGTCTCTCTCCTGGCTATACCCGCTTAACTTCAGTTCCTTTTC
CTGTCAATACGTCCCTGCCCGCCGCCTCTCGGTGTTACCTCCATAATGTCTTGTGTGTGT
TATGTGTGTCGACCTGTGTAGTAGTGTGTGAGCCCTGAGGGGCAGGGCTTGTGGCTCTGG
TGTTAGGTTCAGGGGGCTTCAGACCCTTCTGTGAGCCCCAGGCTCTCATGGCGCTGTCCC
CTTTCCTCTCCTCTTTTCCTCCACAACCAGGGCATGGAGCATGTGGCTGTCCTGAGGTTC
CTAACTGATGCGCCTCCCTCCCACCTCCTCAAGTGGTGACTTTGTGTGCCCTTCCTCCTC
CTCTGTGTATTCCTTCTCGATGCTTTCCTTGGTGTTAACCTGAATAAAGAGGCGTCATCT
CCCCTCGGAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               39-316, + strand, RNAz p=0.96507

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               39-316, + strand, RNAz p=0.96507

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_001013635, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_001013635, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-906, gnl|bosTau2|chr5 (25699278-25700189)
               

               
               1-906, gnl|Hg17|chr12 (46865084-46865976)
               

               
               1-906, gnl|Mm7|chr15 (98172398-98173314)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-906, gnl|bosTau2|chr5 (25699278-25700189)
               

               
               1-906, gnl|Hg17|chr12 (46865084-46865976)
               

               
               1-906, gnl|Mm7|chr15 (98172398-98173314)

	1-906, gnl\|bosTau2\|chr5 (25699278-25700189)
	1-906, gnl\|Hg17\|chr12 (46865084-46865976)
	1-906, gnl\|Mm7\|chr15 (98172398-98173314)