Non-Coding RNA Search

Ss1.1-Pig2-123E24.5

Sequence:


               
               GAACGGCTGTGCCGGGGCCCTGCTGAGGCTCCCTTTCCTCAAAGCTGCCCACGTGAGTGA
GCAGTTTGCCCGGCACATTGACCAGTGTATCCGTGGCAGCCGGAATGGTGGGCCCCAGGG
GATGCTGGCCCAGCTACAGCAATGCCTGGAAAGCGTTCTGATCTTCTCTGGTTTGGAGAT
CGCCACCACTTTCGAGCATTACTACCAGCACTACATGGTGGACCGTGTCTTTGCCGTGGG
CTTCTCGAGCTGGCTGGAGGAGGTTGCACTGGATCAGATCGGCCCCTGCTTCCCCAACCG
CCTCCCCCAGCAGATTTTTCGGAGCCTGAGCACCTCGGAGGAGCGGCAGCGCCAGTTCCA
CGTGTACCAGCTTCAGCGGCTTGATCAGCAACTCCTGAAGCTGGAGGGCACAGAGAGGAA
GATCCAGGTGGGCTGTGAAGCCAGTGGCAGGGGGCACACAAGAGGGAATGGAGAGGAAGC
TGAGCTGGAGGTTGGGGTGGTGGCAGAGGCAGTAGCGGCGATAGCCGAAGAGGCCGAGAA
GGAGGAGGATGACAACGAGGACGAGGACGACAACGAGGACCTCTACTATGAAGGGGCGAT
GCCGGAAATGTCTGTGCTCGTGCTGAACGGCTCACCCACTGGCTCCATCTGCCACCCGCT
CAACCCCAGAACCTGCTTGCCCGCCTACCTGAGGGACACCTTGAACCGATACTCCAACTT
CTACATCAAGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAACGGCTGTGCCGGGGCCCTGCTGAGGCTCCCTTTCCTCAAAGCTGCCCACGTGAGTGA
GCAGTTTGCCCGGCACATTGACCAGTGTATCCGTGGCAGCCGGAATGGTGGGCCCCAGGG
GATGCTGGCCCAGCTACAGCAATGCCTGGAAAGCGTTCTGATCTTCTCTGGTTTGGAGAT
CGCCACCACTTTCGAGCATTACTACCAGCACTACATGGTGGACCGTGTCTTTGCCGTGGG
CTTCTCGAGCTGGCTGGAGGAGGTTGCACTGGATCAGATCGGCCCCTGCTTCCCCAACCG
CCTCCCCCAGCAGATTTTTCGGAGCCTGAGCACCTCGGAGGAGCGGCAGCGCCAGTTCCA
CGTGTACCAGCTTCAGCGGCTTGATCAGCAACTCCTGAAGCTGGAGGGCACAGAGAGGAA
GATCCAGGTGGGCTGTGAAGCCAGTGGCAGGGGGCACACAAGAGGGAATGGAGAGGAAGC
TGAGCTGGAGGTTGGGGTGGTGGCAGAGGCAGTAGCGGCGATAGCCGAAGAGGCCGAGAA
GGAGGAGGATGACAACGAGGACGAGGACGACAACGAGGACCTCTACTATGAAGGGGCGAT
GCCGGAAATGTCTGTGCTCGTGCTGAACGGCTCACCCACTGGCTCCATCTGCCACCCGCT
CAACCCCAGAACCTGCTTGCCCGCCTACCTGAGGGACACCTTGAACCGATACTCCAACTT
CTACATCAAGAG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               314-463, + strand, RNAz p=0.945197

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               314-463, + strand, RNAz p=0.945197

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-730, gnl|bosTau2|chr23 (16027875-16028585)
               

               
               1-730, gnl|Hg17|chr6 (43118569-43115873)
               

               
               1-730, gnl|Mm7|chr17 (44788914-44790954)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-730, gnl|bosTau2|chr23 (16027875-16028585)
               

               
               1-730, gnl|Hg17|chr6 (43118569-43115873)
               

               
               1-730, gnl|Mm7|chr17 (44788914-44790954)

	1-730, gnl\|bosTau2\|chr23 (16027875-16028585)
	1-730, gnl\|Hg17\|chr6 (43118569-43115873)
	1-730, gnl\|Mm7\|chr17 (44788914-44790954)