Non-Coding RNA Search

Ss1.1-Pig2-123J15.5

Sequence:


               
               AATCTCTGAGCCCTGGAAGCGAGTGCACTAGTGACCCTTACATTGGGAGGGCTGGAGAGA
CCCTCAGTTATGACTTGAGGGCGGAACTTCGTGGACCAGCAATCCAAGTCCTGGGCACTG
TCAAATGGTTCAACGTGCGGAATGGTTACGGATTCATCAACAGGAATGACACCAAGGAGG
ATGTCTTTGTTCACCAGACAGCTATTAAAAGAAACAACCCCAGGAAGTTTCTGCGCAGCG
TTGGAGATGGCGAGACCGTGGAGTTCGATGTCGTGGAAGGAGAGAAGGTTCCGCAGATTC
ATCCCCCGGCCCCGCCCAGCTGCCCCACCACCCATGGTGGCTGAGGCCCCATCAGGCGGG
ACCGAACCGGGCAGCGAAGGGGAGCGAGCCGAGGACTCCGGGCAGCGGCCCAGACGACGG
CGCCCACCACCCTTCTTCTACCGCCGGCGCTTCGTGCGAGGCCCTCGGCCCCTGAACCAG
CAGCAGCCCTTAGAGGGCACCGACGGGGTAGAACCCAAAGAGACAGCCCCGCTGGAGGGG
GACCAACAGCAGGGAGATGAGCGAGTCCCTCCACCCAGGTTCCGGCCCAGGTACCGAAGG
GTCCCCGCTTTTTTCCCCAGGCCTTTTCGCCCCAGACCACCCCAGCAGCCCACCACAGAA
GGCGGGGATGGCGAGACCAAGCCCAGCCAAGGTCCCACGGACGGTTCCCGGCCGGAGCCC
CAGCGCCCACGAAACCGCCCCTACTTCCAGCGGAGACGGCAGCAGCCCCCTGGACCCAGG
CAGTCCGCAGCCCCGGAGACCTCAGCCCCCATCAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATCTCTGAGCCCTGGAAGCGAGTGCACTAGTGACCCTTACATTGGGAGGGCTGGAGAGA
CCCTCAGTTATGACTTGAGGGCGGAACTTCGTGGACCAGCAATCCAAGTCCTGGGCACTG
TCAAATGGTTCAACGTGCGGAATGGTTACGGATTCATCAACAGGAATGACACCAAGGAGG
ATGTCTTTGTTCACCAGACAGCTATTAAAAGAAACAACCCCAGGAAGTTTCTGCGCAGCG
TTGGAGATGGCGAGACCGTGGAGTTCGATGTCGTGGAAGGAGAGAAGGTTCCGCAGATTC
ATCCCCCGGCCCCGCCCAGCTGCCCCACCACCCATGGTGGCTGAGGCCCCATCAGGCGGG
ACCGAACCGGGCAGCGAAGGGGAGCGAGCCGAGGACTCCGGGCAGCGGCCCAGACGACGG
CGCCCACCACCCTTCTTCTACCGCCGGCGCTTCGTGCGAGGCCCTCGGCCCCTGAACCAG
CAGCAGCCCTTAGAGGGCACCGACGGGGTAGAACCCAAAGAGACAGCCCCGCTGGAGGGG
GACCAACAGCAGGGAGATGAGCGAGTCCCTCCACCCAGGTTCCGGCCCAGGTACCGAAGG
GTCCCCGCTTTTTTCCCCAGGCCTTTTCGCCCCAGACCACCCCAGCAGCCCACCACAGAA
GGCGGGGATGGCGAGACCAAGCCCAGCCAAGGTCCCACGGACGGTTCCCGGCCGGAGCCC
CAGCGCCCACGAAACCGCCCCTACTTCCAGCGGAGACGGCAGCAGCCCCCTGGACCCAGG
CAGTCCGCAGCCCCGGAGACCTCAGCCCCCATCAAC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q59HE1_HUMAN

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q59HE1_HUMAN

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               286-404, - strand, RNAz p=0.645686

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               286-404, - strand, RNAz p=0.645686

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

Help | Less info


               
               108-284, gnl|bosTau2|chrX (28029457-28029633)
               

               
               108-284, gnl|Hg17|chr16 (31488052-31487876)
               

               
               108-284, gnl|Mm7|chr6 (37618066-37617890)
               


               
               286-496, gnl|bosTau2|chr19 (20534216-20534006)
               

               
               286-496, gnl|Hg17|chr17 (7134503-7134293)
               

               
               286-496, gnl|Mm7|chr11 (70021523-70021733)
               


               
               598-798, gnl|bosTau2|chr19 (20533492-20533292)
               

               
               598-798, gnl|Hg17|chr17 (7133790-7133573)
               

               
               598-798, gnl|Mm7|chr11 (70022145-70022341)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               108-284, gnl|bosTau2|chrX (28029457-28029633)
               

               
               108-284, gnl|Hg17|chr16 (31488052-31487876)
               

               
               108-284, gnl|Mm7|chr6 (37618066-37617890)
               


               
               286-496, gnl|bosTau2|chr19 (20534216-20534006)
               

               
               286-496, gnl|Hg17|chr17 (7134503-7134293)
               

               
               286-496, gnl|Mm7|chr11 (70021523-70021733)
               


               
               598-798, gnl|bosTau2|chr19 (20533492-20533292)
               

               
               598-798, gnl|Hg17|chr17 (7133790-7133573)
               

               
               598-798, gnl|Mm7|chr11 (70022145-70022341)

	108-284, gnl\|bosTau2\|chrX (28029457-28029633)
	108-284, gnl\|Hg17\|chr16 (31488052-31487876)
	108-284, gnl\|Mm7\|chr6 (37618066-37617890)

	286-496, gnl\|bosTau2\|chr19 (20534216-20534006)
	286-496, gnl\|Hg17\|chr17 (7134503-7134293)
	286-496, gnl\|Mm7\|chr11 (70021523-70021733)

	598-798, gnl\|bosTau2\|chr19 (20533492-20533292)
	598-798, gnl\|Hg17\|chr17 (7133790-7133573)
	598-798, gnl\|Mm7\|chr11 (70022145-70022341)