Ss1.1-Pig2-123L22.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGATGATCCAGGTCGTGAAGTGGGCAAAGGTACTTCCAGGATTTAAAAACTTGCCTCTC GAGGACCAAATTACCCTAATCCAGTATTCTTGGATGTGTCTGTCATCATTTGCCTTGAGC TGGAGATCGTACAAACATACGAACAGCCAGTTTCTCTATTTTGCACCAGACCTAGTCTTT AATGAAGAGAAGATGCACCAGTCTGCCATGTATGAGCTCTGCCAGGGGATGCACCAGATC AGCCTGCAGTTCGTCCGCCTGCAGCTCACCTTTGAAGAGTACACCATCATGAAAGTTCTG CTGCTGCTGAGCACAATTCCAAAAGATGGCCTCAAAAGCCAGGCTGCATTTGAAGAAATG AGGACAAATTACATCAAAGAACTGAGGAAGATGGTAACCAGGTGTCCCAACAACTCTGGA CAGAGCTGGCAGAGGTTCTACCAACTGACCAAGCTTCTGGACTCCATGCATGATCTGGTG AGCGACTTGTTGGAATTTTGCTTCTACACCTTCCGGGAGTCCCAGGCCCTCAAAGTGGAG TTCCCCGCGATGCTGGTGGAGATCATCAGTGACCAGCTGCCCAAGGTGGAGTCTGGGAAC GCCAAGACCCTTTACTTTCACAGGAAGTGACGGGAGGCGTCTCACCAGGAGAACTTTGCC TTAAGTTTCCCCGTGTTTATTCCACACCCACGAAGGACCCAAGAAATCCTATTTTTAACA CATGAGGGGCGATCCCCACTTGTCCAGCAGTTTCTCAAGTTGAAAATCCTGCCGAGGGTT TGGAGGCAGGGCAAGCAGGGTGACGTGGACTTGGTGAGACCTGCGCAATCTGGAAGGTTC TTCCCTCTCCAAGCCCCAGCGCTTAAAAAACACGCTCCCGTTCCTCTGGATGAAAAGCCA TATCTAGTCAATAACTCTCTTGATTTTGATACTTTAACAGATGGAGGTTTTAACTCTGCC GTGTAGTTTCTGGTATCGTTCGCTCCTTTTAAAAGGGTTCACGGACTAACGAACTTTTTC AAGCTCACCCCTGGTTTGCACATAAAACGTAGAGTTGATATGGGGCATTAATATTCTTTT GTTATTTAAAAAAAAAACAACAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGATGATCCAGGTCGTGAAGTGGGCAAAGGTACTTCCAGGATTTAAAAACTTGCCTCTC GAGGACCAAATTACCCTAATCCAGTATTCTTGGATGTGTCTGTCATCATTTGCCTTGAGC TGGAGATCGTACAAACATACGAACAGCCAGTTTCTCTATTTTGCACCAGACCTAGTCTTT AATGAAGAGAAGATGCACCAGTCTGCCATGTATGAGCTCTGCCAGGGGATGCACCAGATC AGCCTGCAGTTCGTCCGCCTGCAGCTCACCTTTGAAGAGTACACCATCATGAAAGTTCTG CTGCTGCTGAGCACAATTCCAAAAGATGGCCTCAAAAGCCAGGCTGCATTTGAAGAAATG AGGACAAATTACATCAAAGAACTGAGGAAGATGGTAACCAGGTGTCCCAACAACTCTGGA CAGAGCTGGCAGAGGTTCTACCAACTGACCAAGCTTCTGGACTCCATGCATGATCTGGTG AGCGACTTGTTGGAATTTTGCTTCTACACCTTCCGGGAGTCCCAGGCCCTCAAAGTGGAG TTCCCCGCGATGCTGGTGGAGATCATCAGTGACCAGCTGCCCAAGGTGGAGTCTGGGAAC GCCAAGACCCTTTACTTTCACAGGAAGTGACGGGAGGCGTCTCACCAGGAGAACTTTGCC TTAAGTTTCCCCGTGTTTATTCCACACCCACGAAGGACCCAAGAAATCCTATTTTTAACA CATGAGGGGCGATCCCCACTTGTCCAGCAGTTTCTCAAGTTGAAAATCCTGCCGAGGGTT TGGAGGCAGGGCAAGCAGGGTGACGTGGACTTGGTGAGACCTGCGCAATCTGGAAGGTTC TTCCCTCTCCAAGCCCCAGCGCTTAAAAAACACGCTCCCGTTCCTCTGGATGAAAAGCCA TATCTAGTCAATAACTCTCTTGATTTTGATACTTTAACAGATGGAGGTTTTAACTCTGCC GTGTAGTTTCTGGTATCGTTCGCTCCTTTTAAAAGGGTTCACGGACTAACGAACTTTTTC AAGCTCACCCCTGGTTTGCACATAAAACGTAGAGTTGATATGGGGCATTAATATTCTTTT GTTATTTAAAAAAAAAACAACAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 312-428, + strand, RNAz p=0.85857 | |
| 352-473, - strand, RNAz p=0.836644 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 312-428, + strand, RNAz p=0.85857 | |
| 352-473, - strand, RNAz p=0.836644 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 312-473, gnl|bosTau2|chr17 (6104623-6104462) | |
| 312-473, gnl|canFam2|chr15 (49435334-49435526) | |
| 312-473, gnl|danRer3|chr1 (36189082-36188892) | |
| 312-473, gnl|dasNov1|scaffold_5799 (46215-46407) | |
| 312-473, gnl|echTel1|scaffold_308913 (243579-243771) | |
| 312-473, gnl|fr1|chrUn (260893490-260893669) | |
| 312-473, gnl|galGal2|chr4 (32597848-32598039) | |
| 312-473, gnl|hg17|chr4 (149392852-149393043) | |
| 312-473, gnl|Hg17|chr4 (149393021-149392861) | |
| 312-473, gnl|loxAfr1|scaffold_587 (12093-11901) | |
| 312-473, gnl|mm7|chr8 (75761237-75761048) | |
| 312-473, gnl|Mm7|chr8 (75761066-75761226) | |
| 312-473, gnl|monDom2|scaffold_9 (17078148-17078340) | |
| 312-473, gnl|oryCun1|scaffold_203087 (45619-45429) | |
| 312-473, gnl|panTro1|chr3 (166664983-166665174) | |
| 312-473, gnl|rheMac2|chr6 (139719257-139719422) | |
| 312-473, gnl|rn3|chr18 (32411927-32412093) | |
| 312-473, gnl|tetNig1|chr18 (7194585-7194764) | |
| 312-473, gnl|xenTro1|scaffold_512 (162382-162568) | |
| 475-1104, gnl|bosTau2|chr17 (6063830-6063203) | |
| 475-1104, gnl|Hg17|chr4 (149360255-149359624) | |
| 475-1104, gnl|Mm7|chr8 (75786017-75786649) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 312-473, gnl|bosTau2|chr17 (6104623-6104462) | |
| 312-473, gnl|canFam2|chr15 (49435334-49435526) | |
| 312-473, gnl|danRer3|chr1 (36189082-36188892) | |
| 312-473, gnl|dasNov1|scaffold_5799 (46215-46407) | |
| 312-473, gnl|echTel1|scaffold_308913 (243579-243771) | |
| 312-473, gnl|fr1|chrUn (260893490-260893669) | |
| 312-473, gnl|galGal2|chr4 (32597848-32598039) | |
| 312-473, gnl|hg17|chr4 (149392852-149393043) | |
| 312-473, gnl|Hg17|chr4 (149393021-149392861) | |
| 312-473, gnl|loxAfr1|scaffold_587 (12093-11901) | |
| 312-473, gnl|mm7|chr8 (75761237-75761048) | |
| 312-473, gnl|Mm7|chr8 (75761066-75761226) | |
| 312-473, gnl|monDom2|scaffold_9 (17078148-17078340) | |
| 312-473, gnl|oryCun1|scaffold_203087 (45619-45429) | |
| 312-473, gnl|panTro1|chr3 (166664983-166665174) | |
| 312-473, gnl|rheMac2|chr6 (139719257-139719422) | |
| 312-473, gnl|rn3|chr18 (32411927-32412093) | |
| 312-473, gnl|tetNig1|chr18 (7194585-7194764) | |
| 312-473, gnl|xenTro1|scaffold_512 (162382-162568) | |
| 475-1104, gnl|bosTau2|chr17 (6063830-6063203) | |
| 475-1104, gnl|Hg17|chr4 (149360255-149359624) | |
| 475-1104, gnl|Mm7|chr8 (75786017-75786649) |