Non-Coding RNA Search

Ss1.1-Pig2-124M20.5

Sequence:


               
               TGGGACCATTCTGAACCTCATTGTCATCATATTTGTATACATATACACCACGCTGTGAAC
GCCCAGCGGGTCCTCAGGCCTCCGCATGGCCGGAAGACGGGAGTCCTGTATGTCGGCAGA
TGAGTGACCGGACGCTGCGCCCACAAGCAGCCTTGACCTCCTCACACCGCTCCATCAGAT
GCACCTTCGAACTTGCTCAAGGGTCACCAAAATAAACGGATCCTTCTGCTAGGAGCAGAC
ACTAAAGCACAATGAATCCAACAAAACTCACTCGCCCAGCAAGGGAGTCAGCGGCGTCAG
CAGGGGACCCGAAAGAGCGCTGGGAAGCCCAGCCTTTGATGCCATCAGGGAGCAGATGGG
TGCAGAGGCTTATTGTCCCAGAACCCTGACAGGTGTCTTGGATTCCAAAAGAGGAACGGG
GCGGACGCAGCTCAGGGCGCGTCTCCCAGGGCACGCGTGTCCTCCTAACGCCATGAGCTG
TTTAGTACAAAAAAAACCGCAGGGACAATCCTTTGACAAGCATCCCATTCATCAAAAGTG
TCTGACTATTTGATACCGGGGAGATAACTTATTTTTCTTTTTTCATTGGCTTGATGTGTG
TATCTGTTCATATCAAGGTTTATAAATATATATTTTTAATAAATGTGCTCTATTTTTTAG
CATGAACCAAATACTTGGAGAGGCGCTCCTGGATCCATAGAGCTTTCCTTGGTTTAAGCT
GCTTCAGCCCCTAGACTGCAGATGTTCTGTTGTGCATTCACTCTCGTCCTCTCTCTCTCA
TCTTGAATCCTTTGCCGACTCTCTCCCTCTCGCTCTTTTCAGTCTGGAGGACGTTTTCTT
CCCCCGTGATACCAGCCGTGACCTTGGTTGGTGCATGTTCTAAGATTGTCCGTTGAGCGG
CTTTTTGTTGTTATATCGGAGGTGTCGAGCGATCGCAGGCATGTGGACCTCGGATGCACT
GTTTCCTTACTGAGAATGATGCATGAACAAGGGCTGAGTGATAGATCAGCTTAAATTTTT
TTTTTTTACAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGGACCATTCTGAACCTCATTGTCATCATATTTGTATACATATACACCACGCTGTGAAC
GCCCAGCGGGTCCTCAGGCCTCCGCATGGCCGGAAGACGGGAGTCCTGTATGTCGGCAGA
TGAGTGACCGGACGCTGCGCCCACAAGCAGCCTTGACCTCCTCACACCGCTCCATCAGAT
GCACCTTCGAACTTGCTCAAGGGTCACCAAAATAAACGGATCCTTCTGCTAGGAGCAGAC
ACTAAAGCACAATGAATCCAACAAAACTCACTCGCCCAGCAAGGGAGTCAGCGGCGTCAG
CAGGGGACCCGAAAGAGCGCTGGGAAGCCCAGCCTTTGATGCCATCAGGGAGCAGATGGG
TGCAGAGGCTTATTGTCCCAGAACCCTGACAGGTGTCTTGGATTCCAAAAGAGGAACGGG
GCGGACGCAGCTCAGGGCGCGTCTCCCAGGGCACGCGTGTCCTCCTAACGCCATGAGCTG
TTTAGTACAAAAAAAACCGCAGGGACAATCCTTTGACAAGCATCCCATTCATCAAAAGTG
TCTGACTATTTGATACCGGGGAGATAACTTATTTTTCTTTTTTCATTGGCTTGATGTGTG
TATCTGTTCATATCAAGGTTTATAAATATATATTTTTAATAAATGTGCTCTATTTTTTAG
CATGAACCAAATACTTGGAGAGGCGCTCCTGGATCCATAGAGCTTTCCTTGGTTTAAGCT
GCTTCAGCCCCTAGACTGCAGATGTTCTGTTGTGCATTCACTCTCGTCCTCTCTCTCTCA
TCTTGAATCCTTTGCCGACTCTCTCCCTCTCGCTCTTTTCAGTCTGGAGGACGTTTTCTT
CCCCCGTGATACCAGCCGTGACCTTGGTTGGTGCATGTTCTAAGATTGTCCGTTGAGCGG
CTTTTTGTTGTTATATCGGAGGTGTCGAGCGATCGCAGGCATGTGGACCTCGGATGCACT
GTTTCCTTACTGAGAATGATGCATGAACAAGGGCTGAGTGATAGATCAGCTTAAATTTTT
TTTTTTTACAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               798-890, - strand, RNAz p=0.696462

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               798-890, - strand, RNAz p=0.696462

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               1-1031, gnl|bosTau2|chr21 (41311149-41312187)
               

               
               1-1031, gnl|canFam2|chr8 (67760635-67761500)
               

               
               1-1031, gnl|dasNov1|scaffold_2435 (57529-58342)
               

               
               1-1031, gnl|echTel1|scaffold_181533 (4947-5853)
               

               
               1-1031, gnl|Hg17|chr14 (95458999-95460036)
               

               
               1-1031, gnl|hg17|chr2 (240770375-240771231)
               

               
               1-1031, gnl|loxAfr1|scaffold_10454 (21039-21906)
               

               
               1-1031, gnl|mm7|chr12 (102875667-102876517)
               

               
               1-1031, gnl|Mm7|chr12 (102875795-102876899)
               

               
               1-1031, gnl|oryCun1|scaffold_114019 (8241-7399)
               

               
               1-1031, gnl|panTro1|chr13 (131832065-131832920)
               

               
               1-1031, gnl|rheMac2|chr7 (159155846-159156717)
               

               
               1-1031, gnl|rn3|chr6 (129543589-129544441)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1031, gnl|bosTau2|chr21 (41311149-41312187)
               

               
               1-1031, gnl|canFam2|chr8 (67760635-67761500)
               

               
               1-1031, gnl|dasNov1|scaffold_2435 (57529-58342)
               

               
               1-1031, gnl|echTel1|scaffold_181533 (4947-5853)
               

               
               1-1031, gnl|Hg17|chr14 (95458999-95460036)
               

               
               1-1031, gnl|hg17|chr2 (240770375-240771231)
               

               
               1-1031, gnl|loxAfr1|scaffold_10454 (21039-21906)
               

               
               1-1031, gnl|mm7|chr12 (102875667-102876517)
               

               
               1-1031, gnl|Mm7|chr12 (102875795-102876899)
               

               
               1-1031, gnl|oryCun1|scaffold_114019 (8241-7399)
               

               
               1-1031, gnl|panTro1|chr13 (131832065-131832920)
               

               
               1-1031, gnl|rheMac2|chr7 (159155846-159156717)
               

               
               1-1031, gnl|rn3|chr6 (129543589-129544441)

	1-1031, gnl\|bosTau2\|chr21 (41311149-41312187)
	1-1031, gnl\|canFam2\|chr8 (67760635-67761500)
	1-1031, gnl\|dasNov1\|scaffold_2435 (57529-58342)
	1-1031, gnl\|echTel1\|scaffold_181533 (4947-5853)
	1-1031, gnl\|Hg17\|chr14 (95458999-95460036)
	1-1031, gnl\|hg17\|chr2 (240770375-240771231)
	1-1031, gnl\|loxAfr1\|scaffold_10454 (21039-21906)
	1-1031, gnl\|mm7\|chr12 (102875667-102876517)
	1-1031, gnl\|Mm7\|chr12 (102875795-102876899)
	1-1031, gnl\|oryCun1\|scaffold_114019 (8241-7399)
	1-1031, gnl\|panTro1\|chr13 (131832065-131832920)
	1-1031, gnl\|rheMac2\|chr7 (159155846-159156717)
	1-1031, gnl\|rn3\|chr6 (129543589-129544441)