Ss1.1-Pig2-126O20.5
|
AAGGGAGGTGGCGCCTCATTCTGTGTACTACATGCGGCTCCCATGGAACCCATAGGGACT
GCTCCTCTCTCAGATCCAACTGTAAGAAATGGGAGTGCAAGGAGTGTGCACCTTCTGCTG
AAGCCACAGACTACACACCTGAAAACTCAGGTGACATGCCCTGTTGCAGCAGCACCTTCC
AGTCCAGGGAACATTTCTGCAGAGACACCAGCCTGGAAGAGAATCCAGGCCCTTCTTGGA
CTGATTGGCCAGGACCTACCTTATTAGAAAAGCCAGAGTCCTCTGGTCACAGGAGGGGGG
GCCACTCCTGGAAATCCAAGGGCGTCAAAATCATTAAGTGCTGCAAAAAATCCAAGTAAC
AGTTTCTGAGTAGTTGCTAACAAGCACATTTGGGTATGAAGCCATGCTCCTCCATCAGAT
CTGGGGGAGGGAGCACCTTGGGACTGTGAGACAATGAAAGGGGGCCGGCAGTCAGACTCT
GAACCAAGGAAAGAGAAGTCCCAGGGGACGTAGGACAGAACAGAACTGTGATGCCAATTG
TGGGATGTGTTTGTGGCTATGGGAGCAACTCTGCTCTTTCTGCCCGATTCCCAGAGGGCC
CTTTCTTCTCTTTTTTTTTCCACCGAGGTTCTCCCACCTTAATCTGGTTCTTTACCCACG
TTTGTTATTATGCAAATAAAGGTTTTTCTCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AAGGGAGGTGGCGCCTCATTCTGTGTACTACATGCGGCTCCCATGGAACCCATAGGGACT
GCTCCTCTCTCAGATCCAACTGTAAGAAATGGGAGTGCAAGGAGTGTGCACCTTCTGCTG
AAGCCACAGACTACACACCTGAAAACTCAGGTGACATGCCCTGTTGCAGCAGCACCTTCC
AGTCCAGGGAACATTTCTGCAGAGACACCAGCCTGGAAGAGAATCCAGGCCCTTCTTGGA
CTGATTGGCCAGGACCTACCTTATTAGAAAAGCCAGAGTCCTCTGGTCACAGGAGGGGGG
GCCACTCCTGGAAATCCAAGGGCGTCAAAATCATTAAGTGCTGCAAAAAATCCAAGTAAC
AGTTTCTGAGTAGTTGCTAACAAGCACATTTGGGTATGAAGCCATGCTCCTCCATCAGAT
CTGGGGGAGGGAGCACCTTGGGACTGTGAGACAATGAAAGGGGGCCGGCAGTCAGACTCT
GAACCAAGGAAAGAGAAGTCCCAGGGGACGTAGGACAGAACAGAACTGTGATGCCAATTG
TGGGATGTGTTTGTGGCTATGGGAGCAACTCTGCTCTTTCTGCCCGATTCCCAGAGGGCC
CTTTCTTCTCTTTTTTTTTCCACCGAGGTTCTCCCACCTTAATCTGGTTCTTTACCCACG
TTTGTTATTATGCAAATAAAGGTTTTTCTCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAA |
|
206-325, - strand, RNAz p=0.973116 |
|
211-318, - strand, RNAz p=0.718354 |
|
406-523, - strand, RNAz p=0.892634 |
|
590-694, - strand, RNAz p=0.976709 |
|
594-694, + strand, RNAz p=0.964257 |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
206-325, - strand, RNAz p=0.973116 |
|
211-318, - strand, RNAz p=0.718354 |
|
406-523, - strand, RNAz p=0.892634 |
|
590-694, - strand, RNAz p=0.976709 |
|
594-694, + strand, RNAz p=0.964257 |
|
187-281, - strand, RNAmicro p=0.998583 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
187-281, - strand, RNAmicro p=0.998583 |
|
206-325, DB818572 full-length enriched swine cDNA library, adult thymus Sus
(dbj|DB818572.1|), blast E-value=0, identity=94.17% |
|
206-287, DOG_EST_P77G12 Canis familiaris testis cDNA Canis familiaris cDNA,
(gb|CX991079.1|), blast E-value=1e-32, identity=97.56% |
|
206-287, DOG_EST_P91E01 Canis familiaris testis cDNA Canis familiaris cDNA,
(gb|CX991669.1|), blast E-value=1e-32, identity=97.56% |
|
206-287, DOG_EST_P129A10 Canis familiaris testis cDNA Canis familiaris cDNA,
(gb|CX993231.1|), blast E-value=1e-32, identity=97.56% |
|
206-287, DOG_EST_P130H03 Canis familiaris testis cDNA Canis familiaris cDNA,
(gb|CX993373.1|), blast E-value=1e-32, identity=97.56% |
|
206-287, GL-Cf-1960 GLGC-LIB0001-cf Canis familiaris Normalized Mixed Tissue
(gb|DN745168.1|), blast E-value=1e-32, identity=97.56% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
206-325, DB818572 full-length enriched swine cDNA library, adult thymus Sus
(dbj|DB818572.1|), blast E-value=0, identity=94.17% |
|
206-287, DOG_EST_P77G12 Canis familiaris testis cDNA Canis familiaris cDNA,
(gb|CX991079.1|), blast E-value=1e-32, identity=97.56% |
|
206-287, DOG_EST_P91E01 Canis familiaris testis cDNA Canis familiaris cDNA,
(gb|CX991669.1|), blast E-value=1e-32, identity=97.56% |
|
206-287, DOG_EST_P129A10 Canis familiaris testis cDNA Canis familiaris cDNA,
(gb|CX993231.1|), blast E-value=1e-32, identity=97.56% |
|
206-287, DOG_EST_P130H03 Canis familiaris testis cDNA Canis familiaris cDNA,
(gb|CX993373.1|), blast E-value=1e-32, identity=97.56% |
|
206-287, GL-Cf-1960 GLGC-LIB0001-cf Canis familiaris Normalized Mixed Tissue
(gb|DN745168.1|), blast E-value=1e-32, identity=97.56% |
|
127-694, gnl|bosTau2|chr22 (37006518-37007089) |
|
127-694, gnl|canFam2|chr20 (40339468-40338892) |
|
127-694, gnl|dasNov1|scaffold_125666 (4144-4709) |
|
127-694, gnl|echTel1|scaffold_255307 (7277-7689) |
|
127-694, gnl|hg17|chr3 (52431986-52432561) |
|
127-694, gnl|Hg17|chr3 (52432144-52432697) |
|
127-694, gnl|loxAfr1|scaffold_12994 (32575-33127) |
|
127-694, gnl|mm7|chr14 (28667961-28667438) |
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127-694, gnl|monDom2|scaffold_5 (70665763-70665148) |
|
127-694, gnl|oryCun1|scaffold_198307 (67838-67321) |
|
127-694, gnl|panTro1|chr2 (54047874-54048451) |
|
127-694, gnl|rheMac2|chr2 (83956225-83955648) |
|
127-694, gnl|rn3|chr16 (6671938-6671416) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
127-694, gnl|bosTau2|chr22 (37006518-37007089) |
|
127-694, gnl|canFam2|chr20 (40339468-40338892) |
|
127-694, gnl|dasNov1|scaffold_125666 (4144-4709) |
|
127-694, gnl|echTel1|scaffold_255307 (7277-7689) |
|
127-694, gnl|hg17|chr3 (52431986-52432561) |
|
127-694, gnl|Hg17|chr3 (52432144-52432697) |
|
127-694, gnl|loxAfr1|scaffold_12994 (32575-33127) |
|
127-694, gnl|mm7|chr14 (28667961-28667438) |
|
127-694, gnl|monDom2|scaffold_5 (70665763-70665148) |
|
127-694, gnl|oryCun1|scaffold_198307 (67838-67321) |
|
127-694, gnl|panTro1|chr2 (54047874-54048451) |
|
127-694, gnl|rheMac2|chr2 (83956225-83955648) |
|
127-694, gnl|rn3|chr16 (6671938-6671416) |
