Ss1.1-Pig2-127J02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGATTTTGGATTTATTTCACTTTCAAGATAAGTTGACAGCCCGACAATTTCAGAGAGTCG CCACTACTACCTTTATTACTATGTCAAGAGAACGCCCACAGCTGGCAGCAAAGTATTTAC TCCAACCAGTGTTGGCTCCTCTTCATCGCTGTTTAAACACAGCAGAGATTCCAAAGAGTG ACATGGTGCCAGGAACTGTTTTGGTGACAGAGGAAGAACTTAGTAGATGTATTGAGGATG TATTTAAGGTGTACGTGGTCGGGAATGACCCTGTAACCGTTTTGGTGGATTCCCTGCTCC CGGTGCTGGGAGTGCTCTTCTCTCTCTACTGCTTTACCAAGCAGAGTGTGTCTCACACCA GGTCACTTTGCCAAGAGATCTTATTATGGATCCTGGGGAAGCTGGAGAGGAAGAAAGCAC TTGCTAGCCTGAAAGGATTTGCAGGGTTGGACAGATCTGTGCCTTCTCTCCATTCTCTGT GTCACTTTAAAGCTGCCGCTCAAGGGGGCATTATGATTACCATCAAAGAGGCCATTTGTG ATGAAGATGAAGATGAAGCCCTGTACCAGAAGGTGTCCTCAGAGCAGTGCCAGGTAGAGC ACCTTGGGGACTTACTGTCCCACTGCCAGGAGTGCGGTTTGGCAGGCGACTTCTTCATCC TCTGCTTGAAGGAGCTGACTCAGGTGGCTGTGGAAAATGAAGCAGAGTTAGAAACAGAGC CCTTCTCCAGCACAAGCCTCTTGGAATTAGAGCAGCACCAGACTCTGCTTGTGGAAGACC AGGAGCGGAAGCTGCTCGTTCTCCAGCTGGTGGCTGTTCTGTGCGAGAGAATGTCTGAGC AGATATTCACAAACATCACTCAGGTTGTGGACTTTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGATTTTGGATTTATTTCACTTTCAAGATAAGTTGACAGCCCGACAATTTCAGAGAGTCG CCACTACTACCTTTATTACTATGTCAAGAGAACGCCCACAGCTGGCAGCAAAGTATTTAC TCCAACCAGTGTTGGCTCCTCTTCATCGCTGTTTAAACACAGCAGAGATTCCAAAGAGTG ACATGGTGCCAGGAACTGTTTTGGTGACAGAGGAAGAACTTAGTAGATGTATTGAGGATG TATTTAAGGTGTACGTGGTCGGGAATGACCCTGTAACCGTTTTGGTGGATTCCCTGCTCC CGGTGCTGGGAGTGCTCTTCTCTCTCTACTGCTTTACCAAGCAGAGTGTGTCTCACACCA GGTCACTTTGCCAAGAGATCTTATTATGGATCCTGGGGAAGCTGGAGAGGAAGAAAGCAC TTGCTAGCCTGAAAGGATTTGCAGGGTTGGACAGATCTGTGCCTTCTCTCCATTCTCTGT GTCACTTTAAAGCTGCCGCTCAAGGGGGCATTATGATTACCATCAAAGAGGCCATTTGTG ATGAAGATGAAGATGAAGCCCTGTACCAGAAGGTGTCCTCAGAGCAGTGCCAGGTAGAGC ACCTTGGGGACTTACTGTCCCACTGCCAGGAGTGCGGTTTGGCAGGCGACTTCTTCATCC TCTGCTTGAAGGAGCTGACTCAGGTGGCTGTGGAAAATGAAGCAGAGTTAGAAACAGAGC CCTTCTCCAGCACAAGCCTCTTGGAATTAGAGCAGCACCAGACTCTGCTTGTGGAAGACC AGGAGCGGAAGCTGCTCGTTCTCCAGCTGGTGGCTGTTCTGTGCGAGAGAATGTCTGAGC AGATATTCACAAACATCACTCAGGTTGTGGACTTTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 748-865, + strand, RNAz p=0.93672 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 748-865, + strand, RNAz p=0.93672 |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 1-165, gnl|bosTau2|chr18 (14191341-14191177) | |
| 1-165, gnl|canFam2|chr5 (83729716-83729578) | |
| 1-165, gnl|danRer3|chr18 (14976883-14977023) | |
| 1-165, gnl|fr1|chrUn (303822247-303822122) | |
| 1-165, gnl|hg17|chr16 (67469500-67469637) | |
| 1-165, gnl|Hg17|chr16 (67469520-67469684) | |
| 1-165, gnl|loxAfr1|scaffold_52770 (14053-14191) | |
| 1-165, gnl|mm7|chr8 (105297933-105298068) | |
| 1-165, gnl|Mm7|chr8 (105297951-105298115) | |
| 1-165, gnl|monDom2|scaffold_23 (5377766-5377630) | |
| 1-165, gnl|panTro1|chr18 (61792897-61793035) | |
| 1-165, gnl|rheMac2|chr20 (67240431-67240568) | |
| 1-165, gnl|rn3|chr19 (36543660-36543795) | |
| 247-355, gnl|bosTau2|chr18 (14172927-14172819) | |
| 247-355, gnl|canFam2|chr5 (83702375-83702231) | |
| 247-355, gnl|dasNov1|scaffold_17652 (33957-34098) | |
| 247-355, gnl|echTel1|scaffold_324450 (96464-96608) | |
| 247-355, gnl|hg17|chr16 (67491815-67491959) | |
| 247-355, gnl|Hg17|chr16 (67491836-67491944) | |
| 247-355, gnl|loxAfr1|scaffold_7116 (79487-79343) | |
| 247-355, gnl|mm7|chr8 (105315610-105315752) | |
| 247-355, gnl|Mm7|chr8 (105315631-105315739) | |
| 247-355, gnl|monDom2|scaffold_23 (5339997-5339851) | |
| 247-355, gnl|oryCun1|scaffold_214809 (3301-3445) | |
| 247-355, gnl|panTro1|chr18 (61815211-61815355) | |
| 247-355, gnl|rheMac2|chr20 (67264022-67264166) | |
| 247-355, gnl|rn3|chr19_random (370543-370694) | |
| 358-538, gnl|bosTau2|chr18 (14171151-14170971) | |
| 358-538, gnl|Hg17|chr16 (67493728-67493908) | |
| 358-538, gnl|Mm7|chr8 (105317077-105317257) | |
| 670-865, gnl|bosTau2|chr18 (14166356-14166161) | |
| 670-865, gnl|Hg17|chr16 (67500613-67500808) | |
| 670-865, gnl|Mm7|chr8 (105324203-105324398) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-165, gnl|bosTau2|chr18 (14191341-14191177) | |
| 1-165, gnl|canFam2|chr5 (83729716-83729578) | |
| 1-165, gnl|danRer3|chr18 (14976883-14977023) | |
| 1-165, gnl|fr1|chrUn (303822247-303822122) | |
| 1-165, gnl|hg17|chr16 (67469500-67469637) | |
| 1-165, gnl|Hg17|chr16 (67469520-67469684) | |
| 1-165, gnl|loxAfr1|scaffold_52770 (14053-14191) | |
| 1-165, gnl|mm7|chr8 (105297933-105298068) | |
| 1-165, gnl|Mm7|chr8 (105297951-105298115) | |
| 1-165, gnl|monDom2|scaffold_23 (5377766-5377630) | |
| 1-165, gnl|panTro1|chr18 (61792897-61793035) | |
| 1-165, gnl|rheMac2|chr20 (67240431-67240568) | |
| 1-165, gnl|rn3|chr19 (36543660-36543795) | |
| 247-355, gnl|bosTau2|chr18 (14172927-14172819) | |
| 247-355, gnl|canFam2|chr5 (83702375-83702231) | |
| 247-355, gnl|dasNov1|scaffold_17652 (33957-34098) | |
| 247-355, gnl|echTel1|scaffold_324450 (96464-96608) | |
| 247-355, gnl|hg17|chr16 (67491815-67491959) | |
| 247-355, gnl|Hg17|chr16 (67491836-67491944) | |
| 247-355, gnl|loxAfr1|scaffold_7116 (79487-79343) | |
| 247-355, gnl|mm7|chr8 (105315610-105315752) | |
| 247-355, gnl|Mm7|chr8 (105315631-105315739) | |
| 247-355, gnl|monDom2|scaffold_23 (5339997-5339851) | |
| 247-355, gnl|oryCun1|scaffold_214809 (3301-3445) | |
| 247-355, gnl|panTro1|chr18 (61815211-61815355) | |
| 247-355, gnl|rheMac2|chr20 (67264022-67264166) | |
| 247-355, gnl|rn3|chr19_random (370543-370694) | |
| 358-538, gnl|bosTau2|chr18 (14171151-14170971) | |
| 358-538, gnl|Hg17|chr16 (67493728-67493908) | |
| 358-538, gnl|Mm7|chr8 (105317077-105317257) | |
| 670-865, gnl|bosTau2|chr18 (14166356-14166161) | |
| 670-865, gnl|Hg17|chr16 (67500613-67500808) | |
| 670-865, gnl|Mm7|chr8 (105324203-105324398) |