Non-Coding RNA Search

Ss1.1-Pig2-127O05.5

Sequence:


               
               AAAATCTAAAGCAAGAGTAGGAAAGTTAATTCGAATGAGTGTGATTTTGTTGAATTGAAC
GTGAGTTTCAAATAGGAGTCTTTTCCTGCAGTTTTTTTGTACTTTTTAGAAGTGCAAACA
ATAAATGAATAAGAGCCTTTGGTAATAATCATGAGAATATAAGAGGTTTAGCTAGACTAC
AAAAAAACTATTGTGTTGTAAAGTTGCATTGCTATTTTCTATTAAAGTGTAATAATCAGC
ATCATGAACAATGAGCTCTTAGTGTTTTATTTATCTGATAAAATTTAAATAAAAGCAGTG
TTAGTGAGAGGTGCAAAGAACTATTCTAATATAGACACTTGAAAGTATCTGTAAGCAATA
TTCATAGGTAAGATTTCACTGTGTACACATACACATTTGAGATTGTATGAGAACAGACAA
TCCATATGATATGCTGTACATTTTACTGAAATGTAAAAGAATCTCACACATTATTTTATA
GAAATAGAGTACTTCAAAAGCATCACCAGCAGACCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAATCTAAAGCAAGAGTAGGAAAGTTAATTCGAATGAGTGTGATTTTGTTGAATTGAAC
GTGAGTTTCAAATAGGAGTCTTTTCCTGCAGTTTTTTTGTACTTTTTAGAAGTGCAAACA
ATAAATGAATAAGAGCCTTTGGTAATAATCATGAGAATATAAGAGGTTTAGCTAGACTAC
AAAAAAACTATTGTGTTGTAAAGTTGCATTGCTATTTTCTATTAAAGTGTAATAATCAGC
ATCATGAACAATGAGCTCTTAGTGTTTTATTTATCTGATAAAATTTAAATAAAAGCAGTG
TTAGTGAGAGGTGCAAAGAACTATTCTAATATAGACACTTGAAAGTATCTGTAAGCAATA
TTCATAGGTAAGATTTCACTGTGTACACATACACATTTGAGATTGTATGAGAACAGACAA
TCCATATGATATGCTGTACATTTTACTGAAATGTAAAAGAATCTCACACATTATTTTATA
GAAATAGAGTACTTCAAAAGCATCACCAGCAGACCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               336-493, + strand, RNAz p=0.924701

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               336-493, + strand, RNAz p=0.924701

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               395-480, + strand, RNAmicro p=0.956132

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               395-480, + strand, RNAmicro p=0.956132

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_003603, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_003603, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-509, gnl|bosTau2|chr27 (9362836-9363355)
               

               
               1-509, gnl|Hg17|chr4 (186883355-186882848)
               

               
               1-509, gnl|Mm7|chr8 (44604259-44604737)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-509, gnl|bosTau2|chr27 (9362836-9363355)
               

               
               1-509, gnl|Hg17|chr4 (186883355-186882848)
               

               
               1-509, gnl|Mm7|chr8 (44604259-44604737)

	1-509, gnl\|bosTau2\|chr27 (9362836-9363355)
	1-509, gnl\|Hg17\|chr4 (186883355-186882848)
	1-509, gnl\|Mm7\|chr8 (44604259-44604737)