Non-Coding RNA Search

Ss1.1-Pig2-128G05.5

Sequence:


               
               GCCGCCTCTTCCATCGACATGGGGGACCTGGGGGGCCTGAGCCTGAGCTCTCCCCCATCA
CTGAGGGATCTGAGGCCAGGGCAGGGCCCCCTGCTCCTGCCCCACCAGCTCCTGTACCAG
CCCCAGCTCCGCTCCAGAGCAGCCCACCAGAGCAGCCACAGAGCATGGAGATGCGCTCCG
TGCTGCGGAAAGCCGGTTCCCCGCGCAAGGTCCGCCGCGCGCGCCTCAATCCACTTGTGC
TGCTGCTGGACGCTGCGCTGACCGGGGAGCTGGACGTGGTGCAGCAGGCGGTGAAGGAGA
TGAACGACCCGAGCCAGCCCAACGAGGAGGGCATCACCGCCCTGCACAACGCCATCTGTG
GCGCCAACTACCCTATCGTGGACTTCCTGATCGCGGCGGGTGCCAACGTCAACTCCCCCG
ACAGCCACGGCTGGACACCGTTGCACTGCGCGGCCTCGTGCAACGACACGGCCATCTGCA
CGGCGCTGGTGCAGCACGGCGCCGCAATCTTTGCCACCACGCTCAGTGACGGCGCCACTG
CCATCGAGAAGTGCGATCCCTACCGCGAGGGCTACACCGACTGCGCCACTTACCTGGCAG
ACGTGGAGCAGAGCATGGGGCTGCTGCACAACGGGGTGGTGTGCGCCCTCTGGGACTACA
GCGCCGAGTTCGGGGACGAGCTGTCCTTCCGCGAGGGCGAGTCGGTCACCGTGTTGCGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCGCCTCTTCCATCGACATGGGGGACCTGGGGGGCCTGAGCCTGAGCTCTCCCCCATCA
CTGAGGGATCTGAGGCCAGGGCAGGGCCCCCTGCTCCTGCCCCACCAGCTCCTGTACCAG
CCCCAGCTCCGCTCCAGAGCAGCCCACCAGAGCAGCCACAGAGCATGGAGATGCGCTCCG
TGCTGCGGAAAGCCGGTTCCCCGCGCAAGGTCCGCCGCGCGCGCCTCAATCCACTTGTGC
TGCTGCTGGACGCTGCGCTGACCGGGGAGCTGGACGTGGTGCAGCAGGCGGTGAAGGAGA
TGAACGACCCGAGCCAGCCCAACGAGGAGGGCATCACCGCCCTGCACAACGCCATCTGTG
GCGCCAACTACCCTATCGTGGACTTCCTGATCGCGGCGGGTGCCAACGTCAACTCCCCCG
ACAGCCACGGCTGGACACCGTTGCACTGCGCGGCCTCGTGCAACGACACGGCCATCTGCA
CGGCGCTGGTGCAGCACGGCGCCGCAATCTTTGCCACCACGCTCAGTGACGGCGCCACTG
CCATCGAGAAGTGCGATCCCTACCGCGAGGGCTACACCGACTGCGCCACTTACCTGGCAG
ACGTGGAGCAGAGCATGGGGCTGCTGCACAACGGGGTGGTGTGCGCCCTCTGGGACTACA
GCGCCGAGTTCGGGGACGAGCTGTCCTTCCGCGAGGGCGAGTCGGTCACCGTGTTGCGGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|18088279|gb|AAH20589.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|18088279|gb|AAH20589.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-168, - strand, RNAz p=0.992685

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-168, - strand, RNAz p=0.992685

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-168, gnl|bosTau2|chr18 (38488131-38488298)
               

               
               1-168, gnl|Hg17|chr19 (50587150-50586977)
               

               
               1-168, gnl|Mm7|chr7 (17055586-17055759)
               


               
               425-621, gnl|bosTau2|chr18 (38490929-38491126)
               

               
               425-621, gnl|Hg17|chr19 (50580836-50580637)
               

               
               425-621, gnl|Mm7|chr7 (17058077-17058292)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-168, gnl|bosTau2|chr18 (38488131-38488298)
               

               
               1-168, gnl|Hg17|chr19 (50587150-50586977)
               

               
               1-168, gnl|Mm7|chr7 (17055586-17055759)
               


               
               425-621, gnl|bosTau2|chr18 (38490929-38491126)
               

               
               425-621, gnl|Hg17|chr19 (50580836-50580637)
               

               
               425-621, gnl|Mm7|chr7 (17058077-17058292)

	1-168, gnl\|bosTau2\|chr18 (38488131-38488298)
	1-168, gnl\|Hg17\|chr19 (50587150-50586977)
	1-168, gnl\|Mm7\|chr7 (17055586-17055759)

	425-621, gnl\|bosTau2\|chr18 (38490929-38491126)
	425-621, gnl\|Hg17\|chr19 (50580836-50580637)
	425-621, gnl\|Mm7\|chr7 (17058077-17058292)