Non-Coding RNA Search

Ss1.1-Pig2-128H07.5

Sequence:


               
               GCCTCGCAAGCTTTTTAAACAACAAATGCATAAAAATGCCTAATACCATTCCAGCCATAG
CAGGTACTCAACTAAACGGAGCTTCCTGGCATTGGAATATGAAATTGTATCTGTTCCACA
CTTCTTTTCAGTGGTGAGTGATGCACACTAACTCCTTTCTCAGCAGGAGCTGTCTCGAGA
GGGAAGAATTTTGATGAAGAAAGCAATGCTTCCATGAGCACAGCCAGGGACGAGACCCGG
GACGGTTTCTACATGGAGGACGGGGACCCGGCCGTGGCTCAGCTCCTGCACGAGAGGACA
TTTGCCTTCTCGTTTTGGCCAAAGGACCGAGTAATGATAAACCGATTAGACAACATCTGT
GAAGCAGTGTTGAAAGGCAAATGGCCGGTAAATAGGCGCCAGATGTTTGATTTCCAGGGC
CTCCTCCCAGGCTACGCGCCCCCCACCGCCGACAGTCCCCTGCAGAAGAGGAGCCTGGCC
GAGCTCTCCATGGTTGGCCAGGCGAGCATCAGCGGGAGCGAGGACCTCACTGCCTCCCCT
CAGATGTCCAAGGAAGACGCCCTCAACCTCTCTGTCCCTCGCCAGCGGAGGAGGAGGAGG
CGAAAGATCGAAATCGAGGCCGAAAGAGCTGCCAAGAGGCGAAACCTCATGGAGATGGTC
GCCCAGCTGCGAGAGTCTCAGGTGGTCTCGGAAAATGGACAGGAGAAAGTTGTAGATTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCTCGCAAGCTTTTTAAACAACAAATGCATAAAAATGCCTAATACCATTCCAGCCATAG
CAGGTACTCAACTAAACGGAGCTTCCTGGCATTGGAATATGAAATTGTATCTGTTCCACA
CTTCTTTTCAGTGGTGAGTGATGCACACTAACTCCTTTCTCAGCAGGAGCTGTCTCGAGA
GGGAAGAATTTTGATGAAGAAAGCAATGCTTCCATGAGCACAGCCAGGGACGAGACCCGG
GACGGTTTCTACATGGAGGACGGGGACCCGGCCGTGGCTCAGCTCCTGCACGAGAGGACA
TTTGCCTTCTCGTTTTGGCCAAAGGACCGAGTAATGATAAACCGATTAGACAACATCTGT
GAAGCAGTGTTGAAAGGCAAATGGCCGGTAAATAGGCGCCAGATGTTTGATTTCCAGGGC
CTCCTCCCAGGCTACGCGCCCCCCACCGCCGACAGTCCCCTGCAGAAGAGGAGCCTGGCC
GAGCTCTCCATGGTTGGCCAGGCGAGCATCAGCGGGAGCGAGGACCTCACTGCCTCCCCT
CAGATGTCCAAGGAAGACGCCCTCAACCTCTCTGTCCCTCGCCAGCGGAGGAGGAGGAGG
CGAAAGATCGAAATCGAGGCCGAAAGAGCTGCCAAGAGGCGAAACCTCATGGAGATGGTC
GCCCAGCTGCGAGAGTCTCAGGTGGTCTCGGAAAATGGACAGGAGAAAGTTGTAGATTTA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               175-294, + strand, RNAz p=0.827017

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               175-294, + strand, RNAz p=0.827017

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               33-325, gnl|bosTau2|chr14 (14902481-14902177)
               

               
               33-325, gnl|Hg17|chr8 (61929335-61929637)
               

               
               33-325, gnl|Mm7|chr4 (8783673-8783979)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               33-325, gnl|bosTau2|chr14 (14902481-14902177)
               

               
               33-325, gnl|Hg17|chr8 (61929335-61929637)
               

               
               33-325, gnl|Mm7|chr4 (8783673-8783979)

	33-325, gnl\|bosTau2\|chr14 (14902481-14902177)
	33-325, gnl\|Hg17\|chr8 (61929335-61929637)
	33-325, gnl\|Mm7\|chr4 (8783673-8783979)