Ss1.1-Pig2-129F16.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTGAGGACCTGTGGTGCGCGCCCAGAGGCTGCGGAGGGCAAGGGGAGGACATCATGGGG CATCGCACCCTAGCCTCTGTCCCAGCTCTATGGGCCTCCATCCCCTGCCCACGCTCTGAG CTGCGCCTGGACCTGGTTCTGGCTTCTGGGCAATCCTTCCGGTGGAGGGAGCAGAGCCCT GCACACTGGAGTGGCGTACTGGCGGACCGTGTATGGACACTGACCCAGACTGAGGAGCAG CTCTACTGCACTGTGTATCGAGGGGACACGGGCCGGGTTGGCAGGCCCACACTAGAAGAG CTAAAAGTGGTACGACAGTACTTCCAGCTGGATATCAGCCTTGCTCAACTGTATCGCCAT TGGAGTACTGTGGACCCCCACTTTCAAGAGGTGGCTCAGAAATTCCAAGGTGTTCGGCTC CTGCAACAAGACCCCATCGAGTGCCTTTTCTCCTTCATCTGTTCCTCCAACAACAACATT GCCCGCATCACTGGCATGGTGGAGCGGCTCTGCAAGGCCTTTGGACCTCGGCTGATCCAG CTTGATGATGTCACCTATCATGGCTTCCCCAGTCTGCAGGCCCTAGCTGGGTCAGAGGTG GAGGCTCAGCTCAGGAAGCTGGGCCTGGGGTACCGTGCCCGCTACGTGAGTGCCAGTGCC CGAGCCATCCTGGAAGAACGGGGTGGGCTTCCCTGGATGCAGCAGCTGCGCCTGGCCCCC TACGAAGAAGCCCACAAGGCCCTCTGCACCCTGCCCGGGGTAGGCACCAAGGTGGCTGAC TGCATCTGCTTGATGGCCCTAGAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTGAGGACCTGTGGTGCGCGCCCAGAGGCTGCGGAGGGCAAGGGGAGGACATCATGGGG CATCGCACCCTAGCCTCTGTCCCAGCTCTATGGGCCTCCATCCCCTGCCCACGCTCTGAG CTGCGCCTGGACCTGGTTCTGGCTTCTGGGCAATCCTTCCGGTGGAGGGAGCAGAGCCCT GCACACTGGAGTGGCGTACTGGCGGACCGTGTATGGACACTGACCCAGACTGAGGAGCAG CTCTACTGCACTGTGTATCGAGGGGACACGGGCCGGGTTGGCAGGCCCACACTAGAAGAG CTAAAAGTGGTACGACAGTACTTCCAGCTGGATATCAGCCTTGCTCAACTGTATCGCCAT TGGAGTACTGTGGACCCCCACTTTCAAGAGGTGGCTCAGAAATTCCAAGGTGTTCGGCTC CTGCAACAAGACCCCATCGAGTGCCTTTTCTCCTTCATCTGTTCCTCCAACAACAACATT GCCCGCATCACTGGCATGGTGGAGCGGCTCTGCAAGGCCTTTGGACCTCGGCTGATCCAG CTTGATGATGTCACCTATCATGGCTTCCCCAGTCTGCAGGCCCTAGCTGGGTCAGAGGTG GAGGCTCAGCTCAGGAAGCTGGGCCTGGGGTACCGTGCCCGCTACGTGAGTGCCAGTGCC CGAGCCATCCTGGAAGAACGGGGTGGGCTTCCCTGGATGCAGCAGCTGCGCCTGGCCCCC TACGAAGAAGCCCACAAGGCCCTCTGCACCCTGCCCGGGGTAGGCACCAAGGTGGCTGAC TGCATCTGCTTGATGGCCCTAGAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 240-359, + strand, RNAz p=0.575155 | |
| 655-774, - strand, RNAz p=0.704529 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 240-359, + strand, RNAz p=0.575155 | |
| 655-774, - strand, RNAz p=0.704529 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 161-412, gnl|bosTau2|chr22 (11901571-11901822) | |
| 161-412, gnl|Hg17|chr3 (9767628-9767879) | |
| 161-412, gnl|Mm7|chr6 (113489292-113489543) | |
| 589-774, gnl|bosTau2|chr22 (11904300-11904485) | |
| 589-774, gnl|canFam2|chr20 (11490820-11490597) | |
| 589-774, gnl|danRer3|chr8 (39999544-39999746) | |
| 589-774, gnl|dasNov1|scaffold_4666 (11777-11554) | |
| 589-774, gnl|echTel1|scaffold_311188 (27017-27237) | |
| 589-774, gnl|fr1|chrUn (178762237-178762418) | |
| 589-774, gnl|galGal2|chr12 (11487700-11487897) | |
| 589-774, gnl|hg17|chr3 (9771376-9771598) | |
| 589-774, gnl|Hg17|chr3 (9771387-9771572) | |
| 589-774, gnl|loxAfr1|scaffold_12207 (4110-4332) | |
| 589-774, gnl|mm7|chr6 (113492688-113492910) | |
| 589-774, gnl|Mm7|chr6 (113492698-113492883) | |
| 589-774, gnl|monDom2|scaffold_5 (36557175-36557394) | |
| 589-774, gnl|oryCun1|scaffold_144319 (3697-3903) | |
| 589-774, gnl|panTro1|chr2 (10151883-10152105) | |
| 589-774, gnl|rheMac2|chr2 (51242205-51241983) | |
| 589-774, gnl|rn3|chr4 (149461675-149461886) | |
| 589-774, gnl|tetNig1|chr9 (6536874-6537059) | |
| 589-774, gnl|xenTro1|scaffold_1005 (168923-169119) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 161-412, gnl|bosTau2|chr22 (11901571-11901822) | |
| 161-412, gnl|Hg17|chr3 (9767628-9767879) | |
| 161-412, gnl|Mm7|chr6 (113489292-113489543) | |
| 589-774, gnl|bosTau2|chr22 (11904300-11904485) | |
| 589-774, gnl|canFam2|chr20 (11490820-11490597) | |
| 589-774, gnl|danRer3|chr8 (39999544-39999746) | |
| 589-774, gnl|dasNov1|scaffold_4666 (11777-11554) | |
| 589-774, gnl|echTel1|scaffold_311188 (27017-27237) | |
| 589-774, gnl|fr1|chrUn (178762237-178762418) | |
| 589-774, gnl|galGal2|chr12 (11487700-11487897) | |
| 589-774, gnl|hg17|chr3 (9771376-9771598) | |
| 589-774, gnl|Hg17|chr3 (9771387-9771572) | |
| 589-774, gnl|loxAfr1|scaffold_12207 (4110-4332) | |
| 589-774, gnl|mm7|chr6 (113492688-113492910) | |
| 589-774, gnl|Mm7|chr6 (113492698-113492883) | |
| 589-774, gnl|monDom2|scaffold_5 (36557175-36557394) | |
| 589-774, gnl|oryCun1|scaffold_144319 (3697-3903) | |
| 589-774, gnl|panTro1|chr2 (10151883-10152105) | |
| 589-774, gnl|rheMac2|chr2 (51242205-51241983) | |
| 589-774, gnl|rn3|chr4 (149461675-149461886) | |
| 589-774, gnl|tetNig1|chr9 (6536874-6537059) | |
| 589-774, gnl|xenTro1|scaffold_1005 (168923-169119) |