Non-Coding RNA Search

Ss1.1-Pig2-130H21.5

Sequence:


               
               AACATCTCTATCTATGATTACAAACAAGCCACGGGATGCCCGCATGAAGCAGAAAATAGG
TGGAATCCATGAAGATACTCATTTCACAGGGGGTCAGAGGGTGATTTTGTGGCTTTCTTC
CAATCAGTCTGGAAAGGCCCAGGAATAAGACCTTTCTGAAAGTTCGGGTTGATCAATAGA
TGCAGAAACCCTATAGGCTGGCTATCAGCCCCAACCAATAGGGCCTGTTTAATTACCCTT
GCCGGGCACAGAGAAGTATGACGTATGCACATTAACTTTGCAACACAGCTTTAGGGCAGG
GACTGGCAGCATCCCTCTCCCAGGGAACTGAGGCTCGGCGATTCAACAGCCTTCCAAGTT
CAAGTTCACCTGCCAAGGGTCCGCCCTAGGATTATCATCCTGGTGATCAGAGCCCAGAGG
CTGTGCCCAGAATTCCTGCATCACCCAGTGACAGGGGAATTGGCAATGCCGCCTGCATCA
CCCAGTGACAGGGGAATTGGCAATGCCGCTTTCCACACTAGTGTGCGCCTGCACACACAC
TCACACACACACCCCCTCTGTCTACTACATGAGCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACATCTCTATCTATGATTACAAACAAGCCACGGGATGCCCGCATGAAGCAGAAAATAGG
TGGAATCCATGAAGATACTCATTTCACAGGGGGTCAGAGGGTGATTTTGTGGCTTTCTTC
CAATCAGTCTGGAAAGGCCCAGGAATAAGACCTTTCTGAAAGTTCGGGTTGATCAATAGA
TGCAGAAACCCTATAGGCTGGCTATCAGCCCCAACCAATAGGGCCTGTTTAATTACCCTT
GCCGGGCACAGAGAAGTATGACGTATGCACATTAACTTTGCAACACAGCTTTAGGGCAGG
GACTGGCAGCATCCCTCTCCCAGGGAACTGAGGCTCGGCGATTCAACAGCCTTCCAAGTT
CAAGTTCACCTGCCAAGGGTCCGCCCTAGGATTATCATCCTGGTGATCAGAGCCCAGAGG
CTGTGCCCAGAATTCCTGCATCACCCAGTGACAGGGGAATTGGCAATGCCGCCTGCATCA
CCCAGTGACAGGGGAATTGGCAATGCCGCTTTCCACACTAGTGTGCGCCTGCACACACAC
TCACACACACACCCCCTCTGTCTACTACATGAGCCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               51-204, - strand, RNAz p=0.911816

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               51-204, - strand, RNAz p=0.911816

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               12-204, gnl|bosTau2|chr19 (25414854-25414662)
               

               
               12-204, gnl|canFam2|chr5 (40308565-40309224)
               

               
               12-204, gnl|hg17|chr17 (13239098-13239804)
               

               
               12-204, gnl|Hg17|chr17 (13239286-13239099)
               

               
               12-204, gnl|oryCun1|scaffold_203857 (305692-305044)
               

               
               12-204, gnl|panTro1|chr19_random (25114232-25113526)
               

               
               12-204, gnl|rheMac2|chr16 (13148905-13149615)

Aligned organism(s): 7 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-204, gnl|bosTau2|chr19 (25414854-25414662)
               

               
               12-204, gnl|canFam2|chr5 (40308565-40309224)
               

               
               12-204, gnl|hg17|chr17 (13239098-13239804)
               

               
               12-204, gnl|Hg17|chr17 (13239286-13239099)
               

               
               12-204, gnl|oryCun1|scaffold_203857 (305692-305044)
               

               
               12-204, gnl|panTro1|chr19_random (25114232-25113526)
               

               
               12-204, gnl|rheMac2|chr16 (13148905-13149615)

	12-204, gnl\|bosTau2\|chr19 (25414854-25414662)
	12-204, gnl\|canFam2\|chr5 (40308565-40309224)
	12-204, gnl\|hg17\|chr17 (13239098-13239804)
	12-204, gnl\|Hg17\|chr17 (13239286-13239099)
	12-204, gnl\|oryCun1\|scaffold_203857 (305692-305044)
	12-204, gnl\|panTro1\|chr19_random (25114232-25113526)
	12-204, gnl\|rheMac2\|chr16 (13148905-13149615)