Non-Coding RNA Search

Ss1.1-Pig2-130H23.5

Sequence:


               
               CACAACTTCATGGTTCCTACTCGGATTCATTTCCGTTGCACCATGATGGGAACTTCAAAT
TGTATACTTTTAAAGTCAATACCATTTTCTTTGTTTTTAAAATGAAGAAAGGTTAAATGA
TTGCTCAAGGTCATAGGGCAAATAAGTGGCAAAATTGGGATTTAATTTGTGCAGTTTGGC
TCCAGAACCCATGCTGTGAACTATTAACTATATAAAGCTGCTTCTCTTACTGTTTTTCTA
GTATATATAGATCAACTGTAGCATAAGATCAAATTTAGTCAAAATCTGTTTGCTTAAAAT
TTTAATACCTTTGAATTATGGTTTAAGCAGTTGAATATATCAGAGAACCAATAAGCAATA
ATCTACTAATAGTTCATCATTTTTCTAACACTCTTTGTGAGCTATCTAAAATGCCGATAT
AAAAAAAAAACAAACAAAAAAACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACAACTTCATGGTTCCTACTCGGATTCATTTCCGTTGCACCATGATGGGAACTTCAAAT
TGTATACTTTTAAAGTCAATACCATTTTCTTTGTTTTTAAAATGAAGAAAGGTTAAATGA
TTGCTCAAGGTCATAGGGCAAATAAGTGGCAAAATTGGGATTTAATTTGTGCAGTTTGGC
TCCAGAACCCATGCTGTGAACTATTAACTATATAAAGCTGCTTCTCTTACTGTTTTTCTA
GTATATATAGATCAACTGTAGCATAAGATCAAATTTAGTCAAAATCTGTTTGCTTAAAAT
TTTAATACCTTTGAATTATGGTTTAAGCAGTTGAATATATCAGAGAACCAATAAGCAATA
ATCTACTAATAGTTCATCATTTTTCTAACACTCTTTGTGAGCTATCTAAAATGCCGATAT
AAAAAAAAAACAAACAAAAAAACA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               289-408, + strand, RNAz p=0.852206

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               289-408, + strand, RNAz p=0.852206

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               64-412, gnl|bosTau2|chr22 (23027854-23028184)
               

               
               64-412, gnl|canFam2|chr20 (25715748-25715359)
               

               
               64-412, gnl|hg17|chr3 (69149778-69150159)
               

               
               64-412, gnl|Hg17|chr3 (69150096-69149795)
               

               
               64-412, gnl|oryCun1|scaffold_157272 (12692-12394)
               

               
               64-412, gnl|panTro1|chr2 (70935960-70936341)
               

               
               64-412, gnl|rheMac2|chr2 (67134916-67134536)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               64-412, gnl|bosTau2|chr22 (23027854-23028184)
               

               
               64-412, gnl|canFam2|chr20 (25715748-25715359)
               

               
               64-412, gnl|hg17|chr3 (69149778-69150159)
               

               
               64-412, gnl|Hg17|chr3 (69150096-69149795)
               

               
               64-412, gnl|oryCun1|scaffold_157272 (12692-12394)
               

               
               64-412, gnl|panTro1|chr2 (70935960-70936341)
               

               
               64-412, gnl|rheMac2|chr2 (67134916-67134536)

	64-412, gnl\|bosTau2\|chr22 (23027854-23028184)
	64-412, gnl\|canFam2\|chr20 (25715748-25715359)
	64-412, gnl\|hg17\|chr3 (69149778-69150159)
	64-412, gnl\|Hg17\|chr3 (69150096-69149795)
	64-412, gnl\|oryCun1\|scaffold_157272 (12692-12394)
	64-412, gnl\|panTro1\|chr2 (70935960-70936341)
	64-412, gnl\|rheMac2\|chr2 (67134916-67134536)