Non-Coding RNA Search

Ss1.1-Pig2-130L18.5

Sequence:


               
               ACGGTGGGGGTTCCCGGTCTTGGCTTTGGCGGGAGCGCTTGGAAGCGTTGGTCGTAGAGC
TAAACGATGTCTCAGGAACGGGCGGTCCCAGCGAGCGCGGTTGCCCTGGAAGAATTAAGT
AGCTGGCCGGAGGAGGTCTGCCGCCGGGAACTGCCGTCTGTCCTGCCTCGGCTCCTTATA
TCCTTCATTGTCACTTCTACTTAGGGTTGTGGGGCGGGTCTTCACTTTCCCTCCTGTGCC
TCATCCCGGCTCCCGGGGGCCGTGTTGTGTTCCTGCGGCTTCAACCCTCTTGCTTTCTTT
GTTGCTAAGCGAGATAAATAAGCGAGGGAATGAAAAGCAGGAAAGAGTCGTAGGTACCGA
GGCCGAAGTCATGCCTGGCTTTGGCCCTGGAAGGACTCGCAGAGGTGTTGTGCCAGTGAT
TTTGGCAGTGGATGTGGCGTTTTCTTCCATTCCGCTGGGCCTTTGCGTTGTGCTGTACCT
GCAATTAAGTGTGACTTCTGCATGGGGGGAGCGGGGGAGGCAAGGACTCAGACTTGAGAG
GTAAGCTGAGCTAATAGTGAATCTGTCTATTCTGGGCGTTTACACCTAGTCTCAGACCTT
CTGCAGGCGCTTTTCAAAGAGGCCTATTCCCTACAAAAGCAGCTAATGGAACTGCTGGAT
ATGGTTTGCATGGACCCTTTGATAGATGAGAATGATGATATTTTGGATATGGTAGTAGTT
ATTCATTCATTGTTGGATATCTGCTCTGTTATTTCCAGTATGGACCATGCATTCCATGCC
AATACTTGGAAATTTATAATTAAGCAGAGCCTTAAGCACCAATCTGTTATAAAGAGTCAG
CTGAAACACAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACGGTGGGGGTTCCCGGTCTTGGCTTTGGCGGGAGCGCTTGGAAGCGTTGGTCGTAGAGC
TAAACGATGTCTCAGGAACGGGCGGTCCCAGCGAGCGCGGTTGCCCTGGAAGAATTAAGT
AGCTGGCCGGAGGAGGTCTGCCGCCGGGAACTGCCGTCTGTCCTGCCTCGGCTCCTTATA
TCCTTCATTGTCACTTCTACTTAGGGTTGTGGGGCGGGTCTTCACTTTCCCTCCTGTGCC
TCATCCCGGCTCCCGGGGGCCGTGTTGTGTTCCTGCGGCTTCAACCCTCTTGCTTTCTTT
GTTGCTAAGCGAGATAAATAAGCGAGGGAATGAAAAGCAGGAAAGAGTCGTAGGTACCGA
GGCCGAAGTCATGCCTGGCTTTGGCCCTGGAAGGACTCGCAGAGGTGTTGTGCCAGTGAT
TTTGGCAGTGGATGTGGCGTTTTCTTCCATTCCGCTGGGCCTTTGCGTTGTGCTGTACCT
GCAATTAAGTGTGACTTCTGCATGGGGGGAGCGGGGGAGGCAAGGACTCAGACTTGAGAG
GTAAGCTGAGCTAATAGTGAATCTGTCTATTCTGGGCGTTTACACCTAGTCTCAGACCTT
CTGCAGGCGCTTTTCAAAGAGGCCTATTCCCTACAAAAGCAGCTAATGGAACTGCTGGAT
ATGGTTTGCATGGACCCTTTGATAGATGAGAATGATGATATTTTGGATATGGTAGTAGTT
ATTCATTCATTGTTGGATATCTGCTCTGTTATTTCCAGTATGGACCATGCATTCCATGCC
AATACTTGGAAATTTATAATTAAGCAGAGCCTTAAGCACCAATCTGTTATAAAGAGTCAG
CTGAAACACAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               269-388, - strand, RNAz p=0.99167

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               269-388, - strand, RNAz p=0.99167

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-551, gnl|bosTau2|chr16 (25628905-25629454)
               

               
               1-551, gnl|Hg17|chr1 (166495839-166496390)
               


               
               553-718, gnl|bosTau2|chr16 (25639202-25639367)
               

               
               553-718, gnl|Hg17|chr1 (166504874-166505039)
               

               
               553-718, gnl|Mm7|chr1 (163949548-163949386)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-551, gnl|bosTau2|chr16 (25628905-25629454)
               

               
               1-551, gnl|Hg17|chr1 (166495839-166496390)
               


               
               553-718, gnl|bosTau2|chr16 (25639202-25639367)
               

               
               553-718, gnl|Hg17|chr1 (166504874-166505039)
               

               
               553-718, gnl|Mm7|chr1 (163949548-163949386)

	1-551, gnl\|bosTau2\|chr16 (25628905-25629454)
	1-551, gnl\|Hg17\|chr1 (166495839-166496390)

	553-718, gnl\|bosTau2\|chr16 (25639202-25639367)
	553-718, gnl\|Hg17\|chr1 (166504874-166505039)
	553-718, gnl\|Mm7\|chr1 (163949548-163949386)