Ss1.1-Pig2-130P20.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACAAATTGGCTTCCCAAAAAGCCCTGGTTCAGGTGGTGGCCTTCACCTCTCTCTTCTTCA TCCTGGTCTCCATCACCACCTTCTGCCTGGAGACCCACGAGGCCTTCAACATCGACCGCA ACGTGACGGAGATCCACCGAGTGGGGAACACCACCAGCGTGCGCTTCCGACGGGAGGTGG AGACGGAGCCCATCCTGACCTACATCGAGGGCGTGTGCGTGCTGTGGTTCACGCTGGAGT TCCTGGTGCGCATCGTGTGCTGCCCCGACACGCTGGACTTCGTCAAGAACCTGCTCAACA TCATCGATTTCGTGGCCATCCTCCCCTTCTACCTGGAAGTGGGGCTGAGCGGCCTGTCCT CCAAGGCGGCCCGTGACGTGCTGGGCTTCCTGCGCGTCGTGCGCTTCGTGCGCATCCTGC GCATCTTCAAGCTCACGCGCCACTTTGTGGGGCTGCGCGTTCTGGGCCACACGCTGCGCG CCAGCACCAACGAGTTCCTGCTGCTCATCATCTTCCTGGCCCTGGGCGTGCTCATCTTCG CCACCATGATCTACTACGCAGAGCGCATAGGCGCCCGGCCCTCCGACCCGCGGGGCAACG ACCACACCGACTTCAAGAACATCCCCATCGGCTTCTGGTGGGCCGTGGTCACCATGACGA CGCTGGGCTACGGGGACATGTACCCCAAGACGTGGTCCGGCATGCTGGTGGGGGCGCTGT GTGCGCTGGCTGGCGTGCTCACCATTGCCATGCCTGTGCCTGTCATTGTCAACAACTTCG GAATGTACTACTCCCTGGCCATGGCCAAGCAGAAGCTGCCTAAGAAACGCAAGAAGCACG TGCCTCGGCCGCCCCAGCTGGAGTCGCCCATTTACTGCAAGTCGCAGGAGACCTCGCCCA GGACACAGACTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACAAATTGGCTTCCCAAAAAGCCCTGGTTCAGGTGGTGGCCTTCACCTCTCTCTTCTTCA TCCTGGTCTCCATCACCACCTTCTGCCTGGAGACCCACGAGGCCTTCAACATCGACCGCA ACGTGACGGAGATCCACCGAGTGGGGAACACCACCAGCGTGCGCTTCCGACGGGAGGTGG AGACGGAGCCCATCCTGACCTACATCGAGGGCGTGTGCGTGCTGTGGTTCACGCTGGAGT TCCTGGTGCGCATCGTGTGCTGCCCCGACACGCTGGACTTCGTCAAGAACCTGCTCAACA TCATCGATTTCGTGGCCATCCTCCCCTTCTACCTGGAAGTGGGGCTGAGCGGCCTGTCCT CCAAGGCGGCCCGTGACGTGCTGGGCTTCCTGCGCGTCGTGCGCTTCGTGCGCATCCTGC GCATCTTCAAGCTCACGCGCCACTTTGTGGGGCTGCGCGTTCTGGGCCACACGCTGCGCG CCAGCACCAACGAGTTCCTGCTGCTCATCATCTTCCTGGCCCTGGGCGTGCTCATCTTCG CCACCATGATCTACTACGCAGAGCGCATAGGCGCCCGGCCCTCCGACCCGCGGGGCAACG ACCACACCGACTTCAAGAACATCCCCATCGGCTTCTGGTGGGCCGTGGTCACCATGACGA CGCTGGGCTACGGGGACATGTACCCCAAGACGTGGTCCGGCATGCTGGTGGGGGCGCTGT GTGCGCTGGCTGGCGTGCTCACCATTGCCATGCCTGTGCCTGTCATTGTCAACAACTTCG GAATGTACTACTCCCTGGCCATGGCCAAGCAGAAGCTGCCTAAGAAACGCAAGAAGCACG TGCCTCGGCCGCCCCAGCTGGAGTCGCCCATTTACTGCAAGTCGCAGGAGACCTCGCCCA GGACACAGACTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 350-549, - strand, RNAz p=0.97515 | |
| 355-749, - strand, RNAz p=0.965789 | |
| 635-754, - strand, RNAz p=0.752566 | |
| 639-757, + strand, RNAz p=0.640214 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 350-549, - strand, RNAz p=0.97515 | |
| 355-749, - strand, RNAz p=0.965789 | |
| 635-754, - strand, RNAz p=0.752566 | |
| 639-757, + strand, RNAz p=0.640214 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 31-902, gnl|bosTau2|chr3 (25219868-25218997) | |
| 31-902, gnl|Hg17|chr1 (110477626-110478497) | |
| 31-902, gnl|Mm7|chr3 (107266730-107265859) | |
| 36-883, gnl|bosTau2|chr15 (19614126-19613279) | |
| 36-883, gnl|Hg17|chr11 (17749791-17750638) | |
| 36-883, gnl|Mm7|chr7 (42603550-42604397) | |
| 612-791, gnl|bosTau2|chr11 (64770734-64770913) | |
| 612-791, gnl|canFam2|chr17 (10725959-10726392) | |
| 612-791, gnl|danRer3|chr13 (34731332-34731708) | |
| 612-791, gnl|dasNov1|scaffold_6606 (8918-8485) | |
| 612-791, gnl|echTel1|scaffold_294553 (137124-137557) | |
| 612-791, gnl|fr1|chrUn (80930265-80930630) | |
| 612-791, gnl|galGal2|chr3 (95266641-95267059) | |
| 612-791, gnl|hg17|chr2 (11004199-11004632) | |
| 612-791, gnl|Hg17|chr2 (11004210-11004389) | |
| 612-791, gnl|loxAfr1|scaffold_131760 (4518-4085) | |
| 612-791, gnl|mm7|chr12 (17229476-17229046) | |
| 612-791, gnl|Mm7|chr12 (17229463-17229284) | |
| 612-791, gnl|monDom2|scaffold_1 (129946684-129947108) | |
| 612-791, gnl|oryCun1|scaffold_62109 (939-500) | |
| 612-791, gnl|panTro1|chr12_random (6749284-6749719) | |
| 612-791, gnl|rheMac2|chr13 (11004047-11004480) | |
| 612-791, gnl|rn3|chr6 (40914440-40914010) | |
| 612-791, gnl|tetNig1|chr14 (4006178-4005812) | |
| 612-791, gnl|xenTro1|scaffold_636 (112180-111771) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 31-902, gnl|bosTau2|chr3 (25219868-25218997) | |
| 31-902, gnl|Hg17|chr1 (110477626-110478497) | |
| 31-902, gnl|Mm7|chr3 (107266730-107265859) | |
| 36-883, gnl|bosTau2|chr15 (19614126-19613279) | |
| 36-883, gnl|Hg17|chr11 (17749791-17750638) | |
| 36-883, gnl|Mm7|chr7 (42603550-42604397) | |
| 612-791, gnl|bosTau2|chr11 (64770734-64770913) | |
| 612-791, gnl|canFam2|chr17 (10725959-10726392) | |
| 612-791, gnl|danRer3|chr13 (34731332-34731708) | |
| 612-791, gnl|dasNov1|scaffold_6606 (8918-8485) | |
| 612-791, gnl|echTel1|scaffold_294553 (137124-137557) | |
| 612-791, gnl|fr1|chrUn (80930265-80930630) | |
| 612-791, gnl|galGal2|chr3 (95266641-95267059) | |
| 612-791, gnl|hg17|chr2 (11004199-11004632) | |
| 612-791, gnl|Hg17|chr2 (11004210-11004389) | |
| 612-791, gnl|loxAfr1|scaffold_131760 (4518-4085) | |
| 612-791, gnl|mm7|chr12 (17229476-17229046) | |
| 612-791, gnl|Mm7|chr12 (17229463-17229284) | |
| 612-791, gnl|monDom2|scaffold_1 (129946684-129947108) | |
| 612-791, gnl|oryCun1|scaffold_62109 (939-500) | |
| 612-791, gnl|panTro1|chr12_random (6749284-6749719) | |
| 612-791, gnl|rheMac2|chr13 (11004047-11004480) | |
| 612-791, gnl|rn3|chr6 (40914440-40914010) | |
| 612-791, gnl|tetNig1|chr14 (4006178-4005812) | |
| 612-791, gnl|xenTro1|scaffold_636 (112180-111771) |