Non-Coding RNA Search

Ss1.1-Pig2-131G14.5

Sequence:


               
               CCGGAAGCGCTTCGGAATCGTCCGGCTGAGAGATGGGCTGCGGGACCGCTATCCCGTGGA
GGATTATCTGGATCTCTTCGACCTGGCCGCGCACCAGATTCATCAAGCCCTGCAGGCCAG
CTCTGCGAAGGAACAGAGCAAGATGAATCGAATCCTTATCGGGGAGGCCAGCGCCTCCAC
CATGTGGGATAACAACGCCTGGACGCTCTTCTACGACAACAGCTCGGATGGCGAGCCCCC
GTTTCTGACCCAGGACTTCATCCACGCCTTTCAGCCCGACGCAAAGCTGATTGTCATGCT
CAGGGACCCCGTGGAGAGGTTGTACTCAGACTATCTCTACTTTGCAAGTTCAAATAAATC
GGCAGATGACTTCCATGAAAAAGTGACAGAGGCGCTGCAGCTGTTTGAAAATTGCATGCT
GGATTATTCATTGCGCGCCTGCGTCTACAACAACACCCTCAACAATGCGATGCCTGTGAG
GCTGCAGGTCGGGCTGTACGCTGTGTATCTCCTGGACTGGCTCACCGTCTTCGATAAAGA
ACAGTTCCTCATTCTGCGCCTGGAAGACCACGCCTCCAACGTCAAGTTCACCATGCACAG
GGTCTTCCAGTTCCTCAGCCTCGGGCCCTTAACTGAGAAGCAAGAGGCCTTGCTGACCAA
GAGCCCAGCGTCCAACGCGCGGCGTCCTGAGGACCGGAACCTGGGGCCCATGTGGCCGGT
CACCCAGAGGATCCTGCAGGACTTCTACGGGCCTTTCAACGCCCGGCTGGCGCAGGTGCT
CGCTGACGAGGCCTTCTTGTGGAAGAAGACCTGAGGGCCCAGTGCCTGCTGCCAGCGCGG
GGCCAGCCTTTCCACTGTTCCCATGGGTATAAAGTCACTCTTGGTGAGAGGAACCCTTTT
GCTCTGAGCCAACCTCTCTGCTCTGGAGAAAACCTCTCCGCAGGCACCTGCTGGGGGAAA
CCGGTTCAGAATTTCCTTCGTGATATTAAAGAGCCCAGCAGTGGTCCCTTCACCAGACTC
CAATGGAGGCTTCTGGAAATGCCACGTGGGAAGGGCCTCCTTCTGCTCCGAGTGGCTGGG
CTCCGGACGAGGCCGGCAGGCGCTGGCCCGGGGGCCGCGGGAAGCGCAGATTCTGGGCCT
GGACAGTCCTGGGGTCCCTGGAGGTCCCCCTGGGGGCTGCCAGAACCTCTTCATACGTGG
TTTGGAAACCCACGGTTTAATCACTAACCTCCTCTGGGTGCAAAATAGAGGCTCTTTTCC
TGTTTCTCCCTTTGCCCCTGACGTCAGCTCTTCTGTCTCTTCAGAGATAAACCGGATTAA
CTCGACTCTACATGAGAAAGAAACACAAGCCAGTTTTGGTAGCACAGCTCTGCCGCGGGG
ACCTCCTCCTCCTCTGTCCTGGTGGACCTAACTCCTGTTTAGCAGAAAATGAACACGTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGGAAGCGCTTCGGAATCGTCCGGCTGAGAGATGGGCTGCGGGACCGCTATCCCGTGGA
GGATTATCTGGATCTCTTCGACCTGGCCGCGCACCAGATTCATCAAGCCCTGCAGGCCAG
CTCTGCGAAGGAACAGAGCAAGATGAATCGAATCCTTATCGGGGAGGCCAGCGCCTCCAC
CATGTGGGATAACAACGCCTGGACGCTCTTCTACGACAACAGCTCGGATGGCGAGCCCCC
GTTTCTGACCCAGGACTTCATCCACGCCTTTCAGCCCGACGCAAAGCTGATTGTCATGCT
CAGGGACCCCGTGGAGAGGTTGTACTCAGACTATCTCTACTTTGCAAGTTCAAATAAATC
GGCAGATGACTTCCATGAAAAAGTGACAGAGGCGCTGCAGCTGTTTGAAAATTGCATGCT
GGATTATTCATTGCGCGCCTGCGTCTACAACAACACCCTCAACAATGCGATGCCTGTGAG
GCTGCAGGTCGGGCTGTACGCTGTGTATCTCCTGGACTGGCTCACCGTCTTCGATAAAGA
ACAGTTCCTCATTCTGCGCCTGGAAGACCACGCCTCCAACGTCAAGTTCACCATGCACAG
GGTCTTCCAGTTCCTCAGCCTCGGGCCCTTAACTGAGAAGCAAGAGGCCTTGCTGACCAA
GAGCCCAGCGTCCAACGCGCGGCGTCCTGAGGACCGGAACCTGGGGCCCATGTGGCCGGT
CACCCAGAGGATCCTGCAGGACTTCTACGGGCCTTTCAACGCCCGGCTGGCGCAGGTGCT
CGCTGACGAGGCCTTCTTGTGGAAGAAGACCTGAGGGCCCAGTGCCTGCTGCCAGCGCGG
GGCCAGCCTTTCCACTGTTCCCATGGGTATAAAGTCACTCTTGGTGAGAGGAACCCTTTT
GCTCTGAGCCAACCTCTCTGCTCTGGAGAAAACCTCTCCGCAGGCACCTGCTGGGGGAAA
CCGGTTCAGAATTTCCTTCGTGATATTAAAGAGCCCAGCAGTGGTCCCTTCACCAGACTC
CAATGGAGGCTTCTGGAAATGCCACGTGGGAAGGGCCTCCTTCTGCTCCGAGTGGCTGGG
CTCCGGACGAGGCCGGCAGGCGCTGGCCCGGGGGCCGCGGGAAGCGCAGATTCTGGGCCT
GGACAGTCCTGGGGTCCCTGGAGGTCCCCCTGGGGGCTGCCAGAACCTCTTCATACGTGG
TTTGGAAACCCACGGTTTAATCACTAACCTCCTCTGGGTGCAAAATAGAGGCTCTTTTCC
TGTTTCTCCCTTTGCCCCTGACGTCAGCTCTTCTGTCTCTTCAGAGATAAACCGGATTAA
CTCGACTCTACATGAGAAAGAAACACAAGCCAGTTTTGGTAGCACAGCTCTGCCGCGGGG
ACCTCCTCCTCCTCTGTCCTGGTGGACCTAACTCCTGTTTAGCAGAAAATGAACACGTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26335915|dbj|BAC31658.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26335915|dbj|BAC31658.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               636-755, - strand, RNAz p=0.513994

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               636-755, - strand, RNAz p=0.513994

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               14-162, gnl|bosTau2|chr26 (30446582-30446434)
               

               
               14-162, gnl|Hg17|chr10 (125791954-125791806)
               

               
               14-162, gnl|Mm7|chr7 (128671698-128671546)
               


               
               317-504, gnl|bosTau2|chr26 (30425612-30425425)
               

               
               317-504, gnl|Hg17|chr10 (125770920-125770699)
               

               
               317-504, gnl|Mm7|chr7 (128652916-128652710)
               


               
               596-1433, gnl|bosTau2|chr26 (30417048-30416208)
               

               
               596-1433, gnl|Hg17|chr10 (125759872-125758885)
               

               
               596-1433, gnl|Mm7|chr7 (128643386-128642481)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               14-162, gnl|bosTau2|chr26 (30446582-30446434)
               

               
               14-162, gnl|Hg17|chr10 (125791954-125791806)
               

               
               14-162, gnl|Mm7|chr7 (128671698-128671546)
               


               
               317-504, gnl|bosTau2|chr26 (30425612-30425425)
               

               
               317-504, gnl|Hg17|chr10 (125770920-125770699)
               

               
               317-504, gnl|Mm7|chr7 (128652916-128652710)
               


               
               596-1433, gnl|bosTau2|chr26 (30417048-30416208)
               

               
               596-1433, gnl|Hg17|chr10 (125759872-125758885)
               

               
               596-1433, gnl|Mm7|chr7 (128643386-128642481)

	14-162, gnl\|bosTau2\|chr26 (30446582-30446434)
	14-162, gnl\|Hg17\|chr10 (125791954-125791806)
	14-162, gnl\|Mm7\|chr7 (128671698-128671546)

	317-504, gnl\|bosTau2\|chr26 (30425612-30425425)
	317-504, gnl\|Hg17\|chr10 (125770920-125770699)
	317-504, gnl\|Mm7\|chr7 (128652916-128652710)

	596-1433, gnl\|bosTau2\|chr26 (30417048-30416208)
	596-1433, gnl\|Hg17\|chr10 (125759872-125758885)
	596-1433, gnl\|Mm7\|chr7 (128643386-128642481)