Ss1.1-Pig2-131J18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGCACCTGGGCGAGGGGGCACCCTCCCACCTCTACTACTGCCAACTGGAGGCCGGCGCCT GCTACATCTTCACGGAGCAGCTGGGCCGCTTCGCCCTGGTAGGAGAGGCCCTCAGTGTGG CCGCAGCCAAGCGCCTCAAGGTGCTCCTATTTGCCCCCGTGGCCTGCACCTCCCTCGAGT ACAATATCCGAGTCTACTGCCTACATGACACCCACGATGCACTCAAGGAGGTGGTACAGC TGGAGAAGCAGCTGGGAGGACAGTTGATCCAGGAGCCCCGCGTCCTGCACTTCAAGGACA GTTATCACAACCTGCGCCTCTCCATCCACGACGTGCCCAGCTCCCTGTGGAAGAGCAAGC TCCTCGTCAGCTACCAGGAGATCCCCTTTTATCATATCTGGAACGGCACGCAGCAGTACC TGCACTGCACCTTCACCTTGGAGCGCGTCAGCCCCAGCACCAGCGACCTGGCCTGCAAGG TGTGGGTGTGGCAGGTGGAGGGCGATGGGCAGAGCTTCAACATCAGCTTCAACATCACCA AGGACACGAGATTTGCTGAGCTGCTGGCCCTGGAGAGTGAAGGGGGGGTCCCAGCCCTAG TGGGCCCCAGTGCCTTCAAGATCCCCTTCCTCATTCGGCAAAAGATCATTACCAGCCTCG ACCCACCCTGTAGCCGGGGTGCCGATTGGCGGACTCTGGCCCAGAAACTCCACCTGGACA GCCATCTCAGCTTCTTTGCCTCCAAGCCCAGCCCCACAGCCATGATCCTCAACCTGTGGG AGGCACGGCACTTCCCCAACGGCAACCTCAGCCAACTGGCTGCAGCAGTGGCCGGACTGG GCCAGCCAGATGCTGGCCTCTTCACGGTATCGGAGGCCGAGTGCTGAGGCCAGCGAGGCC CACAACGCCTACACTCTCACCAGCTTTGGCACCCGCCAGGGACAGGCAGAAGCCAGACAA GGCCCTTCCCCTACACCGGGGAGAGCTGTGTGGACAGGCCTCCTCCTGGGGGATGCTGTC CCCCAACTCTGGCCCTTCAGACCCTGCCCGCACTCCCTTCCCTCCATGGCCTGCCTGGCC AGGCTGGCACTGCCACCTGCTCCAACTCTGCCCTGGCCCCCAGGACCCAGGGTGGACAGT GCCTGGAGCCCGGGCGGGGCCCAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGCACCTGGGCGAGGGGGCACCCTCCCACCTCTACTACTGCCAACTGGAGGCCGGCGCCT GCTACATCTTCACGGAGCAGCTGGGCCGCTTCGCCCTGGTAGGAGAGGCCCTCAGTGTGG CCGCAGCCAAGCGCCTCAAGGTGCTCCTATTTGCCCCCGTGGCCTGCACCTCCCTCGAGT ACAATATCCGAGTCTACTGCCTACATGACACCCACGATGCACTCAAGGAGGTGGTACAGC TGGAGAAGCAGCTGGGAGGACAGTTGATCCAGGAGCCCCGCGTCCTGCACTTCAAGGACA GTTATCACAACCTGCGCCTCTCCATCCACGACGTGCCCAGCTCCCTGTGGAAGAGCAAGC TCCTCGTCAGCTACCAGGAGATCCCCTTTTATCATATCTGGAACGGCACGCAGCAGTACC TGCACTGCACCTTCACCTTGGAGCGCGTCAGCCCCAGCACCAGCGACCTGGCCTGCAAGG TGTGGGTGTGGCAGGTGGAGGGCGATGGGCAGAGCTTCAACATCAGCTTCAACATCACCA AGGACACGAGATTTGCTGAGCTGCTGGCCCTGGAGAGTGAAGGGGGGGTCCCAGCCCTAG TGGGCCCCAGTGCCTTCAAGATCCCCTTCCTCATTCGGCAAAAGATCATTACCAGCCTCG ACCCACCCTGTAGCCGGGGTGCCGATTGGCGGACTCTGGCCCAGAAACTCCACCTGGACA GCCATCTCAGCTTCTTTGCCTCCAAGCCCAGCCCCACAGCCATGATCCTCAACCTGTGGG AGGCACGGCACTTCCCCAACGGCAACCTCAGCCAACTGGCTGCAGCAGTGGCCGGACTGG GCCAGCCAGATGCTGGCCTCTTCACGGTATCGGAGGCCGAGTGCTGAGGCCAGCGAGGCC CACAACGCCTACACTCTCACCAGCTTTGGCACCCGCCAGGGACAGGCAGAAGCCAGACAA GGCCCTTCCCCTACACCGGGGAGAGCTGTGTGGACAGGCCTCCTCCTGGGGGATGCTGTC CCCCAACTCTGGCCCTTCAGACCCTGCCCGCACTCCCTTCCCTCCATGGCCTGCCTGGCC AGGCTGGCACTGCCACCTGCTCCAACTCTGCCCTGGCCCCCAGGACCCAGGGTGGACAGT GCCTGGAGCCCGGGCGGGGCCCAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 32-148, - strand, RNAz p=0.64044 | |
| 44-163, - strand, RNAz p=0.590147 | |
| 758-1164, - strand, RNAz p=0.997592 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 32-148, - strand, RNAz p=0.64044 | |
| 44-163, - strand, RNAz p=0.590147 | |
| 758-1164, - strand, RNAz p=0.997592 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 5-228, gnl|bosTau2|chr28 (21754725-21754502) | |
| 5-228, gnl|canFam2|chr4 (25286624-25286828) | |
| 5-228, gnl|danRer3|chr13 (29982211-29982421) | |
| 5-228, gnl|echTel1|scaffold_306390 (4579-4783) | |
| 5-228, gnl|fr1|chrUn (213520399-213520189) | |
| 5-228, gnl|galGal2|chr6 (11054422-11054626) | |
| 5-228, gnl|hg17|chr10 (72723462-72723666) | |
| 5-228, gnl|Hg17|chr10 (72723474-72723697) | |
| 5-228, gnl|loxAfr1|scaffold_728 (123690-123894) | |
| 5-228, gnl|mm7|chr10 (60290609-60290405) | |
| 5-228, gnl|Mm7|chr10 (60290595-60290372) | |
| 5-228, gnl|monDom2|scaffold_41 (454275-454071) | |
| 5-228, gnl|oryCun1|scaffold_191456 (80845-80641) | |
| 5-228, gnl|panTro1|chr8 (73945924-73946128) | |
| 5-228, gnl|rheMac2|chr9 (65710039-65709835) | |
| 5-228, gnl|rn3|chr20 (28119423-28119219) | |
| 5-228, gnl|tetNig1|chr17 (3063852-3064062) | |
| 5-228, gnl|xenTro1|scaffold_459 (71576-71372) | |
| 374-518, gnl|bosTau2|chr28 (21751791-21751647) | |
| 374-518, gnl|Hg17|chr10 (72726334-72726481) | |
| 374-518, gnl|Mm7|chr10 (60286689-60286543) | |
| 719-1164, gnl|bosTau2|chr7 (26103286-26103733) | |
| 719-1164, gnl|Hg17|chr5 (176239325-176239757) | |
| 719-1164, gnl|Mm7|chr13 (54087193-54087639) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 5-228, gnl|bosTau2|chr28 (21754725-21754502) | |
| 5-228, gnl|canFam2|chr4 (25286624-25286828) | |
| 5-228, gnl|danRer3|chr13 (29982211-29982421) | |
| 5-228, gnl|echTel1|scaffold_306390 (4579-4783) | |
| 5-228, gnl|fr1|chrUn (213520399-213520189) | |
| 5-228, gnl|galGal2|chr6 (11054422-11054626) | |
| 5-228, gnl|hg17|chr10 (72723462-72723666) | |
| 5-228, gnl|Hg17|chr10 (72723474-72723697) | |
| 5-228, gnl|loxAfr1|scaffold_728 (123690-123894) | |
| 5-228, gnl|mm7|chr10 (60290609-60290405) | |
| 5-228, gnl|Mm7|chr10 (60290595-60290372) | |
| 5-228, gnl|monDom2|scaffold_41 (454275-454071) | |
| 5-228, gnl|oryCun1|scaffold_191456 (80845-80641) | |
| 5-228, gnl|panTro1|chr8 (73945924-73946128) | |
| 5-228, gnl|rheMac2|chr9 (65710039-65709835) | |
| 5-228, gnl|rn3|chr20 (28119423-28119219) | |
| 5-228, gnl|tetNig1|chr17 (3063852-3064062) | |
| 5-228, gnl|xenTro1|scaffold_459 (71576-71372) | |
| 374-518, gnl|bosTau2|chr28 (21751791-21751647) | |
| 374-518, gnl|Hg17|chr10 (72726334-72726481) | |
| 374-518, gnl|Mm7|chr10 (60286689-60286543) | |
| 719-1164, gnl|bosTau2|chr7 (26103286-26103733) | |
| 719-1164, gnl|Hg17|chr5 (176239325-176239757) | |
| 719-1164, gnl|Mm7|chr13 (54087193-54087639) |