Non-Coding RNA Search

Ss1.1-Pig2-133P14.5

Sequence:


               
               AGAAAGTTGTGACCTGTTGCGCCAGTCACAGCTGTGCACCGCCTCCCATAGCACTGCTTC
CCAAGTTGCTGGATGAAGAGCTGTACTCTCGGCAGCTGTGAGGCCCGAGGTGGGGAGGAG
GGCAGGGTGGCCTTCTGCCTTCTGCTCTCCAACTGCCTATGTTCTTACTTCCACCCACAG
GTATGTGTTGGGTTTGCCAGCCATGGAGAGGATTCAGGGAGCCAAGGTGCTGCTGTCAGG
CCTTCAGGGCCTGGGGGCTGAGATAGCCAAAAACTTGGTCCTGATGGGAATAGGCAGCCT
CACTCTTCATGATCCCCACCCTACCTGCTGGTCTGACCTGGCTGCCCAGTTTTTCCTCTC
AGAGCAGGACTTAGGAAGGAGCAGGGCTGAGGCATCTCAAGAACTTCTGGCTAAGCTCAA
CGGAGCTGTTCAGGTGTGCATCCAACAAGGTGACATCACCGAGGATCTGCTGCTGCACTT
CCAGGTGGTAGTGCTGACTGCCCTGAAGCTGGAGGAGCAGCTGAAGGTGGGCAGCTTCTG
CCACAAGCATGGAATCTGCTTTCTGGTAGCTGATAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAAAGTTGTGACCTGTTGCGCCAGTCACAGCTGTGCACCGCCTCCCATAGCACTGCTTC
CCAAGTTGCTGGATGAAGAGCTGTACTCTCGGCAGCTGTGAGGCCCGAGGTGGGGAGGAG
GGCAGGGTGGCCTTCTGCCTTCTGCTCTCCAACTGCCTATGTTCTTACTTCCACCCACAG
GTATGTGTTGGGTTTGCCAGCCATGGAGAGGATTCAGGGAGCCAAGGTGCTGCTGTCAGG
CCTTCAGGGCCTGGGGGCTGAGATAGCCAAAAACTTGGTCCTGATGGGAATAGGCAGCCT
CACTCTTCATGATCCCCACCCTACCTGCTGGTCTGACCTGGCTGCCCAGTTTTTCCTCTC
AGAGCAGGACTTAGGAAGGAGCAGGGCTGAGGCATCTCAAGAACTTCTGGCTAAGCTCAA
CGGAGCTGTTCAGGTGTGCATCCAACAAGGTGACATCACCGAGGATCTGCTGCTGCACTT
CCAGGTGGTAGTGCTGACTGCCCTGAAGCTGGAGGAGCAGCTGAAGGTGGGCAGCTTCTG
CCACAAGCATGGAATCTGCTTTCTGGTAGCTGATAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               61-177, + strand, RNAz p=0.629882

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               61-177, + strand, RNAz p=0.629882

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               61-349, gnl|bosTau2|chr22 (38156770-38156481)
               

               
               61-349, gnl|Hg17|chr3 (49826205-49825916)
               

               
               61-349, gnl|Mm7|chr9 (107707344-107707623)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               61-349, gnl|bosTau2|chr22 (38156770-38156481)
               

               
               61-349, gnl|Hg17|chr3 (49826205-49825916)
               

               
               61-349, gnl|Mm7|chr9 (107707344-107707623)

	61-349, gnl\|bosTau2\|chr22 (38156770-38156481)
	61-349, gnl\|Hg17\|chr3 (49826205-49825916)
	61-349, gnl\|Mm7\|chr9 (107707344-107707623)