Non-Coding RNA Search

Ss1.1-Pig2-138M09.5

Sequence:


               
               GCCCTCGACAGTCTCCTCAACCATTCCAGCATGTTCCTCAAGGGGGCCCGGCTTATTCCA
GAAATGGACCAGATCTTCACTGAGGTGGAGATGACAACGTTAGAGAAAGTCATCAATGAG
ACCTGGGCCTGGAAGAATGCAACCATGGCCGAGCAGGCCAAGCTCCCCGCCACAGAGAAG
CCCGTGTTGCTCTCCAAAGACATCGAGGCCAAGATGATGGCTCTGGACCGCGAGGTGCAG
TATCTGCTCAATAAGGCCAAGTTTGCCAAGCCCCGCCCCCGACCCAAGGACAAGAATGGC
ACCCGGGCAGAGCCTCCCCTCAACGCCAGTGCCAGTGACCAGGGGGACAAGGTCATCCCT
CCACCAGGCCAGACTGAAGATGCAAAACCCATTTCCGAGCCTGAGAAAGAGACACAAGCA
GGTTCTGAACCGGCAGGCTCTGAACCTCTGGAGTTAGGAGGTCCTGGAGCAGAATCGGAA
CAGAAGGAGCAGCCGACAGAACAGAAGCGAACTTTGAAGAACGATGAACTATAACCCCCG
CCTCCCAGCCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCTCGACAGTCTCCTCAACCATTCCAGCATGTTCCTCAAGGGGGCCCGGCTTATTCCA
GAAATGGACCAGATCTTCACTGAGGTGGAGATGACAACGTTAGAGAAAGTCATCAATGAG
ACCTGGGCCTGGAAGAATGCAACCATGGCCGAGCAGGCCAAGCTCCCCGCCACAGAGAAG
CCCGTGTTGCTCTCCAAAGACATCGAGGCCAAGATGATGGCTCTGGACCGCGAGGTGCAG
TATCTGCTCAATAAGGCCAAGTTTGCCAAGCCCCGCCCCCGACCCAAGGACAAGAATGGC
ACCCGGGCAGAGCCTCCCCTCAACGCCAGTGCCAGTGACCAGGGGGACAAGGTCATCCCT
CCACCAGGCCAGACTGAAGATGCAAAACCCATTTCCGAGCCTGAGAAAGAGACACAAGCA
GGTTCTGAACCGGCAGGCTCTGAACCTCTGGAGTTAGGAGGTCCTGGAGCAGAATCGGAA
CAGAAGGAGCAGCCGACAGAACAGAAGCGAACTTTGAAGAACGATGAACTATAACCCCCG
CCTCCCAGCCAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|51476877|emb|CAH18405.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|51476877|emb|CAH18405.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               126-324, - strand, RNAz p=0.788568

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               126-324, - strand, RNAz p=0.788568

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               126-368, gnl|bosTau2|chr15 (14243266-14243024)
               

               
               126-368, gnl|Hg17|chr11 (118422725-118422483)
               

               
               126-368, gnl|Mm7|chr9 (44323575-44323817)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               126-368, gnl|bosTau2|chr15 (14243266-14243024)
               

               
               126-368, gnl|Hg17|chr11 (118422725-118422483)
               

               
               126-368, gnl|Mm7|chr9 (44323575-44323817)

	126-368, gnl\|bosTau2\|chr15 (14243266-14243024)
	126-368, gnl\|Hg17\|chr11 (118422725-118422483)
	126-368, gnl\|Mm7\|chr9 (44323575-44323817)