Non-Coding RNA Search

Ss1.1-Pig2-13L14.5

Sequence:


               
               GCCCACGCGTCCGGGGTCCCACCCTCCATGCCCATCCAGTGCCACCCAGCAGCCCTGCTA
GGATCAGTCATCCATCCCAGGGGCCTGAGCGCTGGCCTGGCAGGAAGAGACGTCAACCTT
GAAAAAGAGGAGCATCCAGAAGCACCCGGTCTGTCCAGCCCTTCTGGTGACCTTGCAGAC
AGACCTCAGGCTTCCAGTGTCCCCTCCCCTCCACACAACAGTATAGAGAGCGTAATGGAG
GAATTCCTCCTCCTGGCATCCAAGCAAAGCCTTGGGTATGCCATGTGTTGGGTCTCTCAG
TTTCCTCATCTGGAAAATGGGGACTTCACAGATGAGGAAACCGAGGATCAGATCAGTGAT
GTCATTTGCCTAAAGTCACCCAGCTGGGAAGTGGCACTGGGCTTCAACTCCAGGCATTAT
GACTCCAGAATCCAACAACTTCTACTCTACAGCGCCCCTATAAACCATAGCAATGACAGC
TCTTCTTTCGTGGCAGGAAGAGGTGGACTAATTCATACTAAGGTGTTAGTGACTGCATGG
CTCTCTGAATTATCCTGTCTAAAGAGCAAGGCAACGGGAGAACAAGGTTACTACTCAAGG
ATTGGGAAGCAGTGGTAAGAGCATGGACTTTGGGGTTAGTGTTTGGATTCAAATGCCATC
GGTCCTCCTTCCTAGCTGTGTGGTTTTGGGCAAGTCACTTTAACCTCT------------
------------------------GTTAAACTAGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCACGCGTCCGGGGTCCCACCCTCCATGCCCATCCAGTGCCACCCAGCAGCCCTGCTA
GGATCAGTCATCCATCCCAGGGGCCTGAGCGCTGGCCTGGCAGGAAGAGACGTCAACCTT
GAAAAAGAGGAGCATCCAGAAGCACCCGGTCTGTCCAGCCCTTCTGGTGACCTTGCAGAC
AGACCTCAGGCTTCCAGTGTCCCCTCCCCTCCACACAACAGTATAGAGAGCGTAATGGAG
GAATTCCTCCTCCTGGCATCCAAGCAAAGCCTTGGGTATGCCATGTGTTGGGTCTCTCAG
TTTCCTCATCTGGAAAATGGGGACTTCACAGATGAGGAAACCGAGGATCAGATCAGTGAT
GTCATTTGCCTAAAGTCACCCAGCTGGGAAGTGGCACTGGGCTTCAACTCCAGGCATTAT
GACTCCAGAATCCAACAACTTCTACTCTACAGCGCCCCTATAAACCATAGCAATGACAGC
TCTTCTTTCGTGGCAGGAAGAGGTGGACTAATTCATACTAAGGTGTTAGTGACTGCATGG
CTCTCTGAATTATCCTGTCTAAAGAGCAAGGCAACGGGAGAACAAGGTTACTACTCAAGG
ATTGGGAAGCAGTGGTAAGAGCATGGACTTTGGGGTTAGTGTTTGGATTCAAATGCCATC
GGTCCTCCTTCCTAGCTGTGTGGTTTTGGGCAAGTCACTTTAACCTCT------------
------------------------GTTAAACTAGTA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               99-206, - strand, RNAz p=0.982919
               

               
               240-407, - strand, RNAz p=0.999993

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               99-206, - strand, RNAz p=0.982919
               

               
               240-407, - strand, RNAz p=0.999993

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               121-247, - strand, RNAmicro p=0.999881

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               121-247, - strand, RNAmicro p=0.999881

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               20-573, gnl|bosTau2|chr18 (43787844-43788414)
               

               
               20-573, gnl|Hg17|chr19 (43431046-43430361)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               20-573, gnl|bosTau2|chr18 (43787844-43788414)
               

               
               20-573, gnl|Hg17|chr19 (43431046-43430361)

	99-206, - strand, RNAz p=0.982919
	240-407, - strand, RNAz p=0.999993

	20-573, gnl\|bosTau2\|chr18 (43787844-43788414)
	20-573, gnl\|Hg17\|chr19 (43431046-43430361)