Non-Coding RNA Search

Ss1.1-Pig2-141O16.5

Sequence:


               
               GGGCGGATGGAGGCGCCTCTTCACTGGCAACTTCCCCGGCGCAGAGGGCAAAATAGGCGC
AACGCTGGCCAGCCACCGCCGCAGGTTTTCAGAAGGCGCCCGCGGCAGAAGGGGCTGAGG
AAAGGTTTGGAGTGAAGCACCCATTTCTGCTGGCCTTGGGGTCCTCTGCACATAAAGGGC
TTCGAGCCCTGGCTGCTGGCTCTTTGGGACACCATGTGCTAGTGGCTCGCCACTCAGCAA
CACGGGAGGTAGCGCTGGGGCGCTGGAAAACACCATGGGGCTGTGTTCGGGGAACTGGAT
GCTCCTGGTGGGCTATTGCTATTGTTGTTTTACTTTACTGCCTTTCTTGCTTGAATTAAA
AGTGTTATTGAGAGAAGCCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAGGGGGGGGGCCTTTTAAAAATTTTTCTGGGGGGGGGCCAAAATTTTCCCCCCC
CCCTTTTTTTTTAAAAAAGGGGCCCCTTTAGGGGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCGGATGGAGGCGCCTCTTCACTGGCAACTTCCCCGGCGCAGAGGGCAAAATAGGCGC
AACGCTGGCCAGCCACCGCCGCAGGTTTTCAGAAGGCGCCCGCGGCAGAAGGGGCTGAGG
AAAGGTTTGGAGTGAAGCACCCATTTCTGCTGGCCTTGGGGTCCTCTGCACATAAAGGGC
TTCGAGCCCTGGCTGCTGGCTCTTTGGGACACCATGTGCTAGTGGCTCGCCACTCAGCAA
CACGGGAGGTAGCGCTGGGGCGCTGGAAAACACCATGGGGCTGTGTTCGGGGAACTGGAT
GCTCCTGGTGGGCTATTGCTATTGTTGTTTTACTTTACTGCCTTTCTTGCTTGAATTAAA
AGTGTTATTGAGAGAAGCCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAGGGGGGGGGCCTTTTAAAAATTTTTCTGGGGGGGGGCCAAAATTTTCCCCCCC
CCCTTTTTTTTTAAAAAAGGGGCCCCTTTAGGGGGG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               76-192, + strand, RNAz p=0.903501
               

               
               221-384, - strand, RNAz p=0.801312

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               76-192, + strand, RNAz p=0.903501
               

               
               221-384, - strand, RNAz p=0.801312

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               1-384, gnl|bosTau2|chr2 (56488040-56488420)
               

               
               1-384, gnl|canFam2|chr11 (56422968-56423476)
               

               
               1-384, gnl|dasNov1|scaffold_34296 (13183-13698)
               

               
               1-384, gnl|echTel1|scaffold_297265 (47931-48382)
               

               
               1-384, gnl|hg17|chr9 (37027871-37028380)
               

               
               1-384, gnl|Hg17|chr9 (37028061-37028436)
               

               
               1-384, gnl|loxAfr1|scaffold_3176 (115883-116396)
               

               
               1-384, gnl|mm7|chr4 (44728124-44728592)
               

               
               1-384, gnl|Mm7|chr4 (44728294-44728644)
               

               
               1-384, gnl|oryCun1|scaffold_175779 (44678-45193)
               

               
               1-384, gnl|panTro1|chr11_random (18089483-18088974)
               

               
               1-384, gnl|rheMac2|chr15 (40396655-40396146)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-384, gnl|bosTau2|chr2 (56488040-56488420)
               

               
               1-384, gnl|canFam2|chr11 (56422968-56423476)
               

               
               1-384, gnl|dasNov1|scaffold_34296 (13183-13698)
               

               
               1-384, gnl|echTel1|scaffold_297265 (47931-48382)
               

               
               1-384, gnl|hg17|chr9 (37027871-37028380)
               

               
               1-384, gnl|Hg17|chr9 (37028061-37028436)
               

               
               1-384, gnl|loxAfr1|scaffold_3176 (115883-116396)
               

               
               1-384, gnl|mm7|chr4 (44728124-44728592)
               

               
               1-384, gnl|Mm7|chr4 (44728294-44728644)
               

               
               1-384, gnl|oryCun1|scaffold_175779 (44678-45193)
               

               
               1-384, gnl|panTro1|chr11_random (18089483-18088974)
               

               
               1-384, gnl|rheMac2|chr15 (40396655-40396146)

	76-192, + strand, RNAz p=0.903501
	221-384, - strand, RNAz p=0.801312

	1-384, gnl\|bosTau2\|chr2 (56488040-56488420)
	1-384, gnl\|canFam2\|chr11 (56422968-56423476)
	1-384, gnl\|dasNov1\|scaffold_34296 (13183-13698)
	1-384, gnl\|echTel1\|scaffold_297265 (47931-48382)
	1-384, gnl\|hg17\|chr9 (37027871-37028380)
	1-384, gnl\|Hg17\|chr9 (37028061-37028436)
	1-384, gnl\|loxAfr1\|scaffold_3176 (115883-116396)
	1-384, gnl\|mm7\|chr4 (44728124-44728592)
	1-384, gnl\|Mm7\|chr4 (44728294-44728644)
	1-384, gnl\|oryCun1\|scaffold_175779 (44678-45193)
	1-384, gnl\|panTro1\|chr11_random (18089483-18088974)
	1-384, gnl\|rheMac2\|chr15 (40396655-40396146)